PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_D12G2435
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family MYB_related
Protein Properties Length: 285aa    MW: 31473.7 Da    PI: 9.7218
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_D12G2435genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding38.82.1e-1257101147
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      r +WT+ E++++++a +++  + Wk+I + +g  +t  q++s+ qky
      Gh_D12G2435  57 RESWTEPEHDKFLEALQLFDRD-WKKIEAFVG-SKTVIQIRSHAQKY 101
                      789*****************77.*********.*************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466892.62E-1651107IPR009057Homeodomain-like
PROSITE profilePS5129414.1852106IPR017930Myb domain
Gene3DG3DSA:1.10.10.605.6E-655107IPR009057Homeodomain-like
TIGRFAMsTIGR015571.3E-1855104IPR006447Myb domain, plants
SMARTSM007176.5E-1056104IPR001005SANT/Myb domain
PfamPF002493.9E-1057101IPR001005SANT/Myb domain
CDDcd001679.57E-859102No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 285 aa     Download sequence    Send to blast
MVSKNPNPAE GFYLDPTGMA LPGLGPFAAT DAAASTVSSS EDPNKKIRKP YTITKSRESW  60
TEPEHDKFLE ALQLFDRDWK KIEAFVGSKT VIQIRSHAQK YFLKVQKNGT NEHLPPPRPK  120
RKAAHPYPQK ASKNVHVQPQ ASGSLQSSNA LVDTGCVLRS DPSLMLMNPV TAASSWTHNE  180
QTISFSEAKK GSGMANKSRG SSMSTPQRCQ IGEMTNQGNH GHALRVLPDF VQVYSFIGSV  240
FDPNTTGHLQ KLKKMDPIDI ETVLLLMRNL SINLTSPDFE DHVSF
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ghi.164190.0boll| ovule
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016737436.10.0PREDICTED: protein REVEILLE 6-like isoform X2
SwissprotQ8H0W31e-126RVE6_ARATH; Protein REVEILLE 6
TrEMBLA0A1U8NEJ80.0A0A1U8NEJ8_GOSHI; protein REVEILLE 6-like isoform X2
STRINGGorai.008G274500.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM12902893
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G52660.11e-112MYB_related family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Gray JA,Shalit-Kaneh A,Chu DN,Hsu PY,Harmer SL
    The REVEILLE Clock Genes Inhibit Growth of Juvenile and Adult Plants by Control of Cell Size.
    Plant Physiol., 2017. 173(4): p. 2308-2322
    [PMID:28254761]