PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Gh_D12G2350 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 320aa MW: 36869.4 Da PI: 6.9915 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 60.8 | 2.2e-19 | 123 | 177 | 2 | 56 |
T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 r++++f++eq++ Le +Fe+++ p +++LA++lgL+ rq+ +WFqNrRa+ k Gh_D12G2350 123 RNKRRFSDEQIRSLEVMFESDSRPESLIKQQLANELGLQPRQIAIWFQNRRARSK 177 67889************************************************98 PP | |||||||
2 | HD-ZIP_I/II | 112.7 | 2.3e-36 | 124 | 215 | 2 | 93 |
HD-ZIP_I/II 2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelke 93 +krr+s+eq+++LE +Fe++++ e+ K++la+eLglqprq+a+WFqnrRAR k+kq+E+dy++Lk++ydal+++ e+L++e+++Lr +l++ Gh_D12G2350 124 NKRRFSDEQIRSLEVMFESDSRPESLIKQQLANELGLQPRQIAIWFQNRRARSKAKQIERDYNVLKESYDALSSSYESLKRENQSLRIQLQK 215 79*************************************************************************************99986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 2.92E-18 | 105 | 180 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 5.8E-18 | 113 | 177 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 18.236 | 119 | 179 | IPR001356 | Homeobox domain |
SMART | SM00389 | 5.3E-18 | 122 | 183 | IPR001356 | Homeobox domain |
Pfam | PF00046 | 1.0E-16 | 123 | 177 | IPR001356 | Homeobox domain |
CDD | cd00086 | 9.39E-16 | 123 | 180 | No hit | No description |
PRINTS | PR00031 | 6.0E-5 | 150 | 159 | IPR000047 | Helix-turn-helix motif |
PROSITE pattern | PS00027 | 0 | 154 | 177 | IPR017970 | Homeobox, conserved site |
PRINTS | PR00031 | 6.0E-5 | 159 | 175 | IPR000047 | Helix-turn-helix motif |
Pfam | PF02183 | 8.0E-18 | 179 | 220 | IPR003106 | Leucine zipper, homeobox-associated |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 320 aa Download sequence Send to blast |
MANPCHLREK STRVSNRFPI KHQQEVFSPS KPASDQVQAH PSDTLSTTYR HIVSGSYIMF 60 IYTLALLHLS LLHTLCPVII YHTMLANKEQ LHTAAVKMEL GLSGLDHLDM RHHPITNIKS 120 SNRNKRRFSD EQIRSLEVMF ESDSRPESLI KQQLANELGL QPRQIAIWFQ NRRARSKAKQ 180 IERDYNVLKE SYDALSSSYE SLKRENQSLR IQLQKLKGQL EMEHENQQHY GPNSGNAKPE 240 NGSTILDTNE KVTILLEGYD RLLPCDDNSR NVESKDGDRV ALDMIEATNG SLNSSEKWCS 300 FESNCFLDES SCSSNWWEYW |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 171 | 179 | RRARSKAKQ |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC243110 | 0.0 | AC243110.1 Gossypium raimondii clone GR__Ba0028M03-hoi, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012439840.1 | 0.0 | PREDICTED: homeobox-leucine zipper protein ATHB-12-like | ||||
TrEMBL | A0A0D2TCT9 | 0.0 | A0A0D2TCT9_GOSRA; Uncharacterized protein | ||||
STRING | Gorai.008G258900.1 | 0.0 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM18057 | 7 | 9 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G46680.1 | 2e-39 | homeobox 7 |