PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Gh_D12G2330 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | Dof | ||||||||
Protein Properties | Length: 241aa MW: 26183.2 Da PI: 8.464 | ||||||||
Description | Dof family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-Dof | 66.7 | 3.8e-21 | 14 | 48 | 28 | 62 |
zf-Dof 28 qPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 ryfCk+CrryWt+GG+lrn+PvGgg+rknk+ss Gh_D12G2330 14 GHRYFCKTCRRYWTEGGSLRNIPVGGGSRKNKRSS 48 57******************************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50884 | 15.622 | 1 | 46 | IPR003851 | Zinc finger, Dof-type |
Pfam | PF02701 | 5.2E-15 | 16 | 46 | IPR003851 | Zinc finger, Dof-type |
ProDom | PD007478 | 1.0E-12 | 16 | 46 | IPR003851 | Zinc finger, Dof-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 241 aa Download sequence Send to blast |
MALSLFHPWI LLNGHRYFCK TCRRYWTEGG SLRNIPVGGG SRKNKRSSTS SSSSISTSLT 60 SSKKLPGLVT PPSLSPCSTQ NPKIHDGQDL NLAFPTASQG YRSLSELVQV PLENNNKNQI 120 PSSSSSSPTT SQLSALELLT GITSRGFNSF IPMPVPDPNT VYTPGNFPMQ DFKPTLNFSL 180 DGLGNGYGSL HGVQETTGRL LFPFEDLKQV STTTDIDQHK DQGDSTGYWT GGGDLFGFLH 240 Y |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Ghi.14612 | 0.0 | boll |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC243101 | 0.0 | AC243101.1 Gossypium arboreum clone GM203N05-jhe, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012439815.1 | 1e-153 | PREDICTED: dof zinc finger protein DOF4.6 isoform X1 | ||||
TrEMBL | A0A0D2Q1T9 | 1e-160 | A0A0D2Q1T9_GOSRA; Uncharacterized protein | ||||
STRING | Gorai.008G256800.1 | 1e-161 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM3433 | 27 | 61 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G61850.4 | 3e-33 | Dof family protein |