PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_D12G2308
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family ERF
Protein Properties Length: 303aa    MW: 33295.4 Da    PI: 9.0613
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_D12G2308genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP259.67.2e-19106156256
          AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 
                   y+GVr++  +g+WvAeIr p +   r r++lg++ t+e Aa a+++a+ kl+ge
  Gh_D12G2308 106 LYRGVRQRQ-WGKWVAEIRLPQN---RVRVWLGTYETPETAAYAYDRAAYKLRGE 156
                  59****999.**********954...5**************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000181.25E-21105165No hitNo description
SMARTSM003807.5E-35106169IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.2E-30106164IPR001471AP2/ERF domain
PROSITE profilePS5103223.051106163IPR001471AP2/ERF domain
SuperFamilySSF541712.48E-22106163IPR016177DNA-binding domain
PfamPF008476.9E-13107156IPR001471AP2/ERF domain
PRINTSPR003671.4E-12107118IPR001471AP2/ERF domain
PRINTSPR003671.4E-12145165IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 303 aa     Download sequence    Send to blast
MQEINHPFGF NDGADIGNSV SQLILSGGSN TLDSIFSRCE PSIAAVGTNS VYEPLGSSVY  60
LRQRDLLLKF CQGNASFSRN SVADQLRNSQ NTASTSNCVS PQKTKLYRGV RQRQWGKWVA  120
EIRLPQNRVR VWLGTYETPE TAAYAYDRAA YKLRGEYARL NFPNLKDPAK SGLGDCARLN  180
ALKNAVDAKI QAICQKVKRE RAKKNAKKGN SDRPAASPEA KNDVKVIEPC TSSSSLAFSD  240
NLSNGLLSSP RVSEDGFRRC MNSPSSVSND STMMMAGEPN FEDCSLARMP SFDADLLWEI  300
LAN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A8e-20105163160ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
2gcc_A1e-19103163263ATERF1
3gcc_A1e-19103163263ATERF1
Search in ModeBase
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJX5816260.0JX581626.1 Gossypium hirsutum clone NBRI_GE14296 microsatellite sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016737138.10.0PREDICTED: ethylene-responsive transcription factor ERF061-like
TrEMBLA0A1U8NGQ90.0A0A1U8NGQ9_GOSHI; ethylene-responsive transcription factor ERF061-like
STRINGGorai.008G253900.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM41742551
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G64380.13e-65ERF family protein