PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_D12G2292
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family ERF
Protein Properties Length: 346aa    MW: 38455.6 Da    PI: 5.0001
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_D12G2292genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP255.51.4e-17126173152
          AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkk 52 
                  ++++GVr+++ +g+W+AeIrdp     r  r +lg+++taeeAa aa  + ++
  Gh_D12G2292 126 KKFRGVRQRP-WGKWAAEIRDPL----RrVRLWLGTYDTAEEAAMAAMVYDNA 173
                  59********.**********72....45************999998777664 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000181.52E-24126186No hitNo description
SuperFamilySSF541713.2E-19127187IPR016177DNA-binding domain
SMARTSM003801.1E-35127193IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.104.3E-28127187IPR001471AP2/ERF domain
PROSITE profilePS5103220.521127187IPR001471AP2/ERF domain
PfamPF008473.6E-12127173IPR001471AP2/ERF domain
PRINTSPR003679.0E-11128139IPR001471AP2/ERF domain
PRINTSPR003679.0E-11150166IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 346 aa     Download sequence    Send to blast
MDTCPVPSIK YAEHRNETKL FSPLLNVRLE NQSEMKPRIV RITVTDADAT DSSSDEEHQQ  60
KRTRVSSRNR VKKFVKEITI ESSCPTEKNI VERSKTTSSL SKASRKRPAA VAEAKGKAPA  120
KAPAGKKFRG VRQRPWGKWA AEIRDPLRRV RLWLGTYDTA EEAAMAAMVY DNAAIQLRGP  180
DALTNFTTPQ QKSIQEKTSQ KPLSNSDYNS DEESHKTDPC SPTSVLRCHS LSVDEADSQS  240
AKESREIGSE ARDVVDDSCC LSGENLSGFS DYSSLFSGDM FCSVPDFFDD DTSLHESFLK  300
DELGDGFLST CGDFEFGFGD FSSFQRVDDH FQDIGDLFGS DPLLAI
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A4e-19125186362ATERF1
3gcc_A4e-19125186362ATERF1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ghi.54410.0ovule| stem
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016737121.10.0PREDICTED: ethylene-responsive transcription factor CRF1
TrEMBLA0A1U8NDP80.0A0A1U8NDP8_GOSHI; ethylene-responsive transcription factor CRF1
STRINGGorai.008G252300.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM10281650
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G23750.22e-48cytokinin response factor 2