PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Gh_D12G2135 | ||||||||
Common Name | ERF11 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | ERF | ||||||||
Protein Properties | Length: 320aa MW: 35920.7 Da PI: 6.0722 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 60 | 5.7e-19 | 177 | 227 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpseng.krkrfslgkfgtaeeAakaaiaarkkleg 55 +y+GVr+++ +g+++AeIrdp + k r++lg+f+ a eAaka+++a+ kl+g Gh_D12G2135 177 HYRGVRQRP-WGKFAAEIRDP---NrKGSRVWLGTFDAAIEAAKAYDRAAFKLRG 227 8********.**********9...6566*************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 1.92E-31 | 176 | 235 | No hit | No description |
Gene3D | G3DSA:3.30.730.10 | 1.0E-31 | 176 | 236 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 23.788 | 177 | 235 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 3.1E-13 | 177 | 227 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 4.05E-22 | 177 | 236 | IPR016177 | DNA-binding domain |
SMART | SM00380 | 1.6E-36 | 177 | 241 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.4E-13 | 178 | 189 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.4E-13 | 217 | 237 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 320 aa Download sequence Send to blast |
MESSSEVSSR LQYIEQYLLD ENQFPPVGLW SFSNENQWTN YPKSEVSTSQ SHSLYSQTST 60 SDSCLTASNF NSLDEDDFFN FSTNFPGFES NQSDVFEFDS KPQFIHLTTP KPLASDATAC 120 EFQVKSRSSS NSTPNSQSRK PSLKISLPHK VEWIQFGKPD LTEVKPKNSN TEERSKHYRG 180 VRQRPWGKFA AEIRDPNRKG SRVWLGTFDA AIEAAKAYDR AAFKLRGSKA ILNFPLEAGK 240 LDVIAADGER KRSRDDGAGD EREVKAVKRV NDDVTKARDN GDAPLTPSNW TSFLDCDNDT 300 KGLFNMPLLS PLGLHQVIVI |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1gcc_A | 2e-29 | 176 | 236 | 1 | 61 | ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1 |
2gcc_A | 2e-29 | 174 | 236 | 2 | 64 | ATERF1 |
3gcc_A | 2e-29 | 174 | 236 | 2 | 64 | ATERF1 |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Ghi.8749 | 0.0 | boll| ovule| stem |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. Involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways. {ECO:0000269|PubMed:10715325, ECO:0000269|PubMed:9756931}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Ethylene induction is completely dependent on a functional ETHYLENE-INSENSITIVE2 (EIN2). Wounding as well as cold stress induction does not require EIN2. Transcripts accumulate strongly in cycloheximide-treated plants, a protein synthesis inhibitor. Seems to not be influenced by jasmonate, Alternaria brassicicola, exogenous abscisic acid (ABA), cold, heat, NaCl or drought stress. {ECO:0000269|PubMed:10715325}. |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KC713910 | 0.0 | KC713910.1 Gossypium hirsutum ethylene-responsive transcription factor 11 (ERF11) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016736926.1 | 0.0 | PREDICTED: ethylene-responsive transcription factor 5-like | ||||
Swissprot | O80341 | 5e-62 | EF102_ARATH; Ethylene-responsive transcription factor 5 | ||||
TrEMBL | A0A1U8ND34 | 0.0 | A0A1U8ND34_GOSHI; ethylene-responsive transcription factor 5-like | ||||
STRING | Gorai.008G232700.1 | 0.0 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM10 | 28 | 1650 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G47230.1 | 1e-60 | ethylene responsive element binding factor 5 |
Publications ? help Back to Top | |||
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