PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Gh_D12G2134 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | ERF | ||||||||
Protein Properties | Length: 329aa MW: 36516.5 Da PI: 6.5329 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 64.7 | 2e-20 | 180 | 230 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpseng.krkrfslgkfgtaeeAakaaiaarkkleg 55 +y+GVr+++ +g+++AeIrdp + + r++lg+f+ta eAaka+++a+ kl+g Gh_D12G2134 180 HYRGVRQRP-WGKFAAEIRDP---NrRGSRIWLGTFDTAIEAAKAYDRAAFKLRG 230 8********.**********9...4334*************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 5.24E-32 | 179 | 238 | No hit | No description |
Gene3D | G3DSA:3.30.730.10 | 2.1E-32 | 179 | 239 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 4.3E-37 | 180 | 244 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 6.34E-23 | 180 | 239 | IPR016177 | DNA-binding domain |
Pfam | PF00847 | 2.1E-14 | 180 | 230 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 24.223 | 180 | 238 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.5E-13 | 181 | 192 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.5E-13 | 220 | 240 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009409 | Biological Process | response to cold | ||||
GO:0010200 | Biological Process | response to chitin | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 329 aa Download sequence Send to blast |
MESSSEVSSA LQYIEQYLLD ENQFTPAGLG SFSTANQWIN EPIPEVSTSP SQSLCSQTST 60 SGSCLTLSNF NCLDDDDFFN FSPNFPGFES NRIDVFEFDS KPQFINLTAP KPFEFTPQIT 120 ELSAVKPPTP SSSSSSSSSH NRKPSLKISL PHKVEWIQFR KPDSTKAQPT NSNSEDKNKH 180 YRGVRQRPWG KFAAEIRDPN RRGSRIWLGT FDTAIEAAKA YDRAAFKLRG SKAILNFPLE 240 AGKLDVTAVD GERKRSRDDG AGNEKQVKAG KRANDDVTKA RDNGDAPLTP SNWTSFLDWD 300 NETKGIFNMP LLSPLSPHPP LGFQQVTVI |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2gcc_A | 4e-30 | 177 | 239 | 2 | 64 | ATERF1 |
3gcc_A | 4e-30 | 177 | 239 | 2 | 64 | ATERF1 |
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Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Ghi.15061 | 0.0 | ovule| stem |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. Involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways. {ECO:0000269|PubMed:10715325, ECO:0000269|PubMed:9756931}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00549 | DAP | Transfer from AT5G47230 | Download |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Ethylene induction is completely dependent on a functional ETHYLENE-INSENSITIVE2 (EIN2). Wounding as well as cold stress induction does not require EIN2. Transcripts accumulate strongly in cycloheximide-treated plants, a protein synthesis inhibitor. Seems to not be influenced by jasmonate, Alternaria brassicicola, exogenous abscisic acid (ABA), cold, heat, NaCl or drought stress. {ECO:0000269|PubMed:10715325}. |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KC713910 | 1e-175 | KC713910.1 Gossypium hirsutum ethylene-responsive transcription factor 11 (ERF11) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_017636637.1 | 0.0 | PREDICTED: ethylene-responsive transcription factor 5-like | ||||
Refseq | XP_017636653.1 | 0.0 | PREDICTED: ethylene-responsive transcription factor 5-like | ||||
Swissprot | O80341 | 7e-72 | EF102_ARATH; Ethylene-responsive transcription factor 5 | ||||
TrEMBL | A0A2S1UF87 | 0.0 | A0A2S1UF87_GOSHI; Ethylene responsive element binding factor 5.1 | ||||
STRING | Gorai.008G232600.1 | 0.0 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM10 | 28 | 1650 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G47230.1 | 4e-61 | ethylene responsive element binding factor 5 |
Publications ? help Back to Top | |||
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