PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gh_D12G1996

Organism

Gossypium hirsutum

Taxonomic ID

3635

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

BES1

Protein Properties

Length: 657aa MW: 74567.7 Da PI: 6.422

Description

BES1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gh_D12G1996	genome	NAU-NBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF822	163.9	9.6e-51	46	187	2	136
DUF822 2 gsgrkptwkErEnnkrRERrRRaiaakiyaGLRaqGnyklpkraDnneVlkALcreAGwvvedDGttyrkgskpleeaeaagssasaspesslq.ssl 98 g+g+++++kE+E++k+RER+RRai+++++aGLR++Gn++lp+raD+n+Vl+AL+reAGw+ve+DGttyr++ p +++++ g++ +s es+l+ +sl Gh_D12G1996 46 GKGKREREKEKERTKLRERHRRAITSRMLAGLRQYGNFPLPARADMNDVLAALAREAGWTVEPDGTTYRHSPPP-KHQQHLGAFPVRSGESPLTaTSL 142 899****************************************************************55555.5**************99 PP DUF822 99 kssalaspvesysaspksssfpspssldsislasa.......asl 136 k++++++ ++ ++++ + ++++sp+slds+ +a+ s+ Gh_D12G1996 143 KNCSVKATLDCQQPVVRIDDSLSPASLDSVVIAERdtrsekyPST 187 ********************************9886554443333 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF05687	1.5E-50	46	196	IPR008540	BES1/BZR1 plant transcription factor, N-terminal
SuperFamily	SSF51445	3.21E-155	214	647	IPR017853	Glycoside hydrolase superfamily
Gene3D	G3DSA:3.20.20.80	4.2E-169	217	650	IPR013781	Glycoside hydrolase, catalytic domain
Pfam	PF01373	1.7E-81	241	612	IPR001554	Glycoside hydrolase, family 14
PRINTS	PR00750	2.1E-55	254	268	IPR001554	Glycoside hydrolase, family 14
PRINTS	PR00750	2.1E-55	275	293	IPR001554	Glycoside hydrolase, family 14
PRINTS	PR00750	2.1E-55	297	318	IPR001554	Glycoside hydrolase, family 14
PRINTS	PR00750	2.1E-55	390	412	IPR001554	Glycoside hydrolase, family 14
PRINTS	PR00750	2.1E-55	463	482	IPR001554	Glycoside hydrolase, family 14
PRINTS	PR00750	2.1E-55	497	513	IPR001554	Glycoside hydrolase, family 14
PRINTS	PR00750	2.1E-55	514	525	IPR001554	Glycoside hydrolase, family 14
PRINTS	PR00750	2.1E-55	532	555	IPR001554	Glycoside hydrolase, family 14
PRINTS	PR00750	2.1E-55	570	592	IPR001554	Glycoside hydrolase, family 14

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0000272	Biological Process	polysaccharide catabolic process
GO:0048831	Biological Process	regulation of shoot system development
GO:0005634	Cellular Component	nucleus
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0016161	Molecular Function	beta-amylase activity

Sequence ? help Back to Top
Protein Sequence Length: 657 aa Download sequence Send to blast
MESQPQPQPQ PRRPRGFAAT AAAAAASVSP TGTPSGSAGA PTASSGKGKR EREKEKERTK 60 LRERHRRAIT SRMLAGLRQY GNFPLPARAD MNDVLAALAR EAGWTVEPDG TTYRHSPPPK 120 HQQHLGAFPV RSGESPLTAT SLKNCSVKAT LDCQQPVVRI DDSLSPASLD SVVIAERDTR 180 SEKYPSTSPI NSVECLEADQ LIQDVHSTEH DNDFTGTQYV PVYVKLSTGF INNFCQLADP 240 DGVRQELSHM NSLNVDGVIV DCWWGIVECW NPQKYVWSGY RELFNYIREF KMKIQVVMAF 300 HEYGRTDSAD VLISLPNWIL EIGKENQDIF FTDREGRRTT EFLSWGINKE RVLNGRTGVE 360 VYFDFMRSFR TEFDDLFAEG LISAVEIGLG PSGELRYPSF SERMGWRYPG IGEFQCYDKY 420 LQQHLQRAAK LRGHSFWARG PDNAGHYNSR PHETGFFCER GDYDSYYGRF FLHWYAQALM 480 DHADNVLSLA NLAFEETKII VKIPAVYWWY KTSSHAAELT AGYYNPTNQD GYSPVFEVLK 540 KHSVTVKFVC YGLQICSYEN DEAFADPEGL SWQVLNSVWD RGLKVAGENT LSCYDKEGCL 600 RIIETAKPRN DPDRRHFSFF VYQQPSPLVQ GVICLPDLDY FIKCMHGKNN EVYSLSF

Sequence ? help Back to Top

Protein Sequence Length: 657 aa Download sequence Send to blast

MESQPQPQPQ PRRPRGFAAT AAAAAASVSP TGTPSGSAGA PTASSGKGKR EREKEKERTK  60
LRERHRRAIT SRMLAGLRQY GNFPLPARAD MNDVLAALAR EAGWTVEPDG TTYRHSPPPK  120
HQQHLGAFPV RSGESPLTAT SLKNCSVKAT LDCQQPVVRI DDSLSPASLD SVVIAERDTR  180
SEKYPSTSPI NSVECLEADQ LIQDVHSTEH DNDFTGTQYV PVYVKLSTGF INNFCQLADP  240
DGVRQELSHM NSLNVDGVIV DCWWGIVECW NPQKYVWSGY RELFNYIREF KMKIQVVMAF  300
HEYGRTDSAD VLISLPNWIL EIGKENQDIF FTDREGRRTT EFLSWGINKE RVLNGRTGVE  360
VYFDFMRSFR TEFDDLFAEG LISAVEIGLG PSGELRYPSF SERMGWRYPG IGEFQCYDKY  420
LQQHLQRAAK LRGHSFWARG PDNAGHYNSR PHETGFFCER GDYDSYYGRF FLHWYAQALM  480
DHADNVLSLA NLAFEETKII VKIPAVYWWY KTSSHAAELT AGYYNPTNQD GYSPVFEVLK  540
KHSVTVKFVC YGLQICSYEN DEAFADPEGL SWQVLNSVWD RGLKVAGENT LSCYDKEGCL  600
RIIETAKPRN DPDRRHFSFF VYQQPSPLVQ GVICLPDLDY FIKCMHGKNN EVYSLSF

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1wdq_A	1e-122	218	609	10	401	Beta-amylase
Search in ModeBase

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Ghi.2232	0.0	boll\| ovule

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00543	DAP	Transfer from AT5G45300	Download

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC243146	0.0	AC243146.1 Gossypium hirsutum clone MX073K14-jni, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012439179.1	0.0	PREDICTED: beta-amylase 8 isoform X2
Swissprot	Q9FH80	0.0	BAM8_ARATH; Beta-amylase 8
TrEMBL	A0A0D2RJY2	0.0	A0A0D2RJY2_GOSRA; Beta-amylase
STRING	Gorai.008G218300.1	0.0	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM10888	28	32

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G45300.2	0.0	beta-amylase 2

Publications ? help Back to Top
Soyk S, et al. The Enzyme-Like Domain of Arabidopsis Nuclear β-Amylases Is Critical for DNA Sequence Recognition and Transcriptional Activation. Plant Cell, 2014. 26(4): p. 1746-1763 [PMID:24748042]