PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_D12G1948
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family MYB_related
Protein Properties Length: 222aa    MW: 25068.6 Da    PI: 10.4354
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_D12G1948genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding44.63.4e-1495140247
                      SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      ++WT+eE+  ++++ ++lG+g+W+ I++   + Rt+ q+ s+ qky
      Gh_D12G1948  95 KPWTEEEHRMFLEGLRKLGKGDWRGISKNYVTSRTPVQVASHAQKY 140
                      58*******************************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501588.598724IPR001878Zinc finger, CCHC-type
PROSITE profilePS5129418.7489145IPR017930Myb domain
TIGRFAMsTIGR015573.5E-1892143IPR006447Myb domain, plants
SuperFamilySSF466897.18E-1792145IPR009057Homeodomain-like
SMARTSM007172.2E-1193143IPR001005SANT/Myb domain
PfamPF002494.1E-1295140IPR001005SANT/Myb domain
CDDcd001678.13E-1196141No hitNo description
Gene3DG3DSA:1.10.10.601.4E-1196139IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 222 aa     Download sequence    Send to blast
MAKGTGRKCS HCGHNGHNSR TCSNGKGGYV KLFGVNIAAM ATQECLMQRS FSVGNLPFHA  60
ENHNNGGGVD DGYFSEGHTH SENHNAAAHD IKRAKPWTEE EHRMFLEGLR KLGKGDWRGI  120
SKNYVTSRTP VQVASHAQKY FLRLQAAGNN RKKRRPSLFD MSFQESKSES VLPLNAILTT  180
CLYVQFNLFM LMTRVTWFKF HRMNVLGVPP QKNPVLEIHL RL
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in somatic embryogenesis. Acts as positive regulator of BHLH109. {ECO:0000269|PubMed:26973252}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016747474.11e-125PREDICTED: transcription factor MYB1R1-like
SwissprotQ9FKF91e-53M5162_ARATH; Probable transcription factor At5g61620
TrEMBLA0A0D2TA311e-140A0A0D2TA31_GOSRA; Uncharacterized protein (Fragment)
STRINGGorai.008G213600.11e-141(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM60212747
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G61620.15e-56MYB_related family protein
Publications ? help Back to Top
  1. Nowak K,Gaj MD
    Stress-related function of bHLH109 in somatic embryo induction in Arabidopsis.
    J. Plant Physiol., 2016. 193: p. 119-26
    [PMID:26973252]