PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_D12G1915
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family ERF
Protein Properties Length: 233aa    MW: 25805.2 Da    PI: 9.116
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_D12G1915genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP261.22.3e-1954103255
          AP2   2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                  +y+GVr+++ +g+W+AeIrdp+    + +r++lg+f tae Aa a++ a+++++g
  Gh_D12G1915  54 HYRGVRQRP-WGKWAAEIRDPK----KaARVWLGTFETAEAAALAYDDAALRFKG 103
                  7********.**********94....45***********************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.108.8E-3353112IPR001471AP2/ERF domain
SMARTSM003803.4E-3754117IPR001471AP2/ERF domain
CDDcd000181.54E-1954112No hitNo description
PfamPF008473.1E-1354103IPR001471AP2/ERF domain
SuperFamilySSF541716.54E-2254112IPR016177DNA-binding domain
PROSITE profilePS5103224.93554111IPR001471AP2/ERF domain
PRINTSPR003671.4E-115566IPR001471AP2/ERF domain
PRINTSPR003671.4E-117793IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 233 aa     Download sequence    Send to blast
MNAMVHALAQ VIGNNNSNPL LQLHDDQHPN PTAQQNQSHQ QPQPQDQGNA RRRHYRGVRQ  60
RPWGKWAAEI RDPKKAARVW LGTFETAEAA ALAYDDAALR FKGSKAKLNF PERVQGRLES  120
SYLTTTRQEL ERTEAPPHPP PTYPNISQYA QLLSGGLPNT AFNYAMPSGA AYGSWPAFTT  180
SSHSSSSSSS STTLTSQQQG YMGGFSLHFG GSSPTSDHTN NMGDYDYYYS RDQ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A2e-2750114166ATERF1
3gcc_A2e-2750114166ATERF1
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: Expressed during the S phase of the cell cycle. {ECO:0000269|PubMed:23616605}.
UniprotTISSUE SPECIFICITY: Strongly expressed in proliferating cells. Detected in root tips, stipules, shoot apex, floral tissues, young siliques and abscission zones. {ECO:0000269|PubMed:23616605}.
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator of cell proliferation and axillary bud outgrowth. Involved in maintaining the structure of the shoot apical meristem as well as plastochron and phyllotaxy. Activates several genes involved in cell cycle regulation and dormancy breaking, including CYCD3-3, DPA, and BARD1. Strongly down-regulates DRM1, DRMH1, MARD1 and several genes encoding different types of cell wall-remodeling proteins. {ECO:0000269|PubMed:23616605}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Transiently up-regulated 6 to 15 hours after decapitation. {ECO:0000269|PubMed:23616605}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJX5894283e-73JX589428.1 Gossypium hirsutum clone NBRI_GE24128 microsatellite sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012439061.11e-173PREDICTED: ethylene-responsive transcription factor ERF115-like
SwissprotQ9FH545e-51EF114_ARATH; Ethylene-responsive transcription factor ERF114
TrEMBLA0A0D2T9W81e-172A0A0D2T9W8_GOSRA; Uncharacterized protein
STRINGGorai.008G210600.11e-173(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM2213545
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G61890.13e-34ERF family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Kong X, et al.
    PHB3 Maintains Root Stem Cell Niche Identity through ROS-Responsive AP2/ERF Transcription Factors in Arabidopsis.
    Cell Rep, 2018. 22(5): p. 1350-1363
    [PMID:29386120]