PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_D12G1861
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family C3H
Protein Properties Length: 468aa    MW: 51404.8 Da    PI: 5.1373
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_D12G1861genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH30.75.3e-10128150426
                  ---SGGGGTS--TTTTT-SS-SS CS
      zf-CCCH   4 elCrffartGtCkyGdrCkFaHg 26 
                  e C ++++tG Ck+G +CkF+H+
  Gh_D12G1861 128 ESCAYYMKTGLCKFGYNCKFNHP 150
                  67********************8 PP
2zf-CCCH34.92.5e-11174197326
                  S---SGGGGTS--TTTTT-SS-SS CS
      zf-CCCH   3 telCrffartGtCkyGdrCkFaHg 26 
                  + +C++++rtG Ck+G+ C+F+H+
  Gh_D12G1861 174 QTECKYYLRTGGCKFGNACRFNHS 197
                  568********************8 PP
3zf-CCCH39.59.6e-13219243226
                  -S---SGGGGTS--TTTTT-SS-SS CS
      zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHg 26 
                  ++++C++++r+G CkyG++C+F+H+
  Gh_D12G1861 219 GEKECPYYMRNGSCKYGANCRFNHP 243
                  6789********************9 PP
4zf-CCCH26.88.7e-09355381127
                  --S---SGGGGTS--TTTTT-SS-SSS CS
      zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                  +++++C++f++tG Ck+ ++Ck++H++
  Gh_D12G1861 355 PGQPECSYFLKTGDCKFKSNCKYHHPK 381
                  5789*********************96 PP
5zf-CCCH35.12.2e-11402427227
                  -S---SGGGGTS--TTTTT-SS-SSS CS
      zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                  ++ +C++++r+G+Ck+G+ CkF H++
  Gh_D12G1861 402 DQTICSHYSRYGICKFGPACKFDHSK 427
                  5789********************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010312.99124152IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.49E-6124152IPR000571Zinc finger, CCCH-type
SMARTSM003568.3E-4124151IPR000571Zinc finger, CCCH-type
PfamPF006421.1E-7128150IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.5E-4129149IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.878171199IPR000571Zinc finger, CCCH-type
SMARTSM003566.1E-5171198IPR000571Zinc finger, CCCH-type
SuperFamilySSF902295.49E-6174199IPR000571Zinc finger, CCCH-type
PfamPF006425.7E-9175197IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.9E-5177197IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010316.004217245IPR000571Zinc finger, CCCH-type
SMARTSM003561.0E-6217244IPR000571Zinc finger, CCCH-type
PfamPF006422.6E-10219243IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.49E-6219244IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.1E-5223242IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.333354382IPR000571Zinc finger, CCCH-type
SMARTSM003562.8E-4354381IPR000571Zinc finger, CCCH-type
PfamPF006423.0E-6356381IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.62E-5358383IPR000571Zinc finger, CCCH-type
SMARTSM003563.6E-5400427IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.784400428IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.53E-6401429IPR000571Zinc finger, CCCH-type
PfamPF006421.3E-8403427IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.4E-5405429IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 468 aa     Download sequence    Send to blast
MSQSEETPVP DAMPTDSTSH LGLQSPDPGS TSSPDLSPYD LNHSAVETEH EESSLQQQLQ  60
NLDLKEEEVK TDRKDDGERE SNNDADGNAA EDEDGENEEE RNDNEIDGEN VKKSEGKRSH  120
YPVRPDAESC AYYMKTGLCK FGYNCKFNHP IRRTTQAVKE KVKEEVESTE KPSQTECKYY  180
LRTGGCKFGN ACRFNHSTAK SSTSPILELN FLGLPIRQGE KECPYYMRNG SCKYGANCRF  240
NHPDPTAAGA CDPTSGYGNG GSVSPQAASQ VNMLPWSSPR ALNETAAYIP ILFSPPQVVP  300
PPNPEWNGYQ TTVYPPPEGS LHPAPAYVMN NPATETAVYT HNQPQMVADE FPARPGQPEC  360
SYFLKTGDCK FKSNCKYHHP KNRVAKMAPC VLSDKGLPLR PDQTICSHYS RYGICKFGPA  420
CKFDHSKQEA PSTMAMAGLD QPPPFSHSAA TEQTAIAAGT DTAVQQPV
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ghi.51950.0boll| ovule
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJX5906580.0JX590658.1 Gossypium hirsutum clone NBRI_GE25620 microsatellite sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012438978.10.0PREDICTED: zinc finger CCCH domain-containing protein 43 isoform X1
SwissprotQ9STM41e-141C3H43_ARATH; Zinc finger CCCH domain-containing protein 43
TrEMBLA0A0D2U6J20.0A0A0D2U6J2_GOSRA; Uncharacterized protein
STRINGGorai.008G204400.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM41762758
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G48440.11e-130C3H family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]