PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gh_D12G1758

Organism

Gossypium hirsutum

Taxonomic ID

3635

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

M-type_MADS

Protein Properties

Length: 352aa MW: 39877.4 Da PI: 8.4564

Description

M-type_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gh_D12G1758	genome	NAU-NBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	74.8	7e-24	9	53	1	45
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSE CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgk 45 kr e++snrqvt+skRr+gilKKA+ELS+LCd+ + +++fs+tgk Gh_D12G1758 9 KRLESYSNRQVTYSKRRTGILKKAKELSILCDIHIILLMFSPTGK 53 689****************************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00432	1.9E-30	1	60	IPR002100	Transcription factor, MADS-box
PROSITE profile	PS50066	25.077	1	61	IPR002100	Transcription factor, MADS-box
SuperFamily	SSF55455	4.32E-26	2	95	IPR002100	Transcription factor, MADS-box
CDD	cd00266	1.48E-26	2	82	No hit	No description
PRINTS	PR00404	1.3E-18	3	23	IPR002100	Transcription factor, MADS-box
Pfam	PF00319	3.3E-20	11	56	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	1.3E-18	23	38	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	1.3E-18	38	59	IPR002100	Transcription factor, MADS-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 352 aa Download sequence Send to blast
MGRVKLKIKR LESYSNRQVT YSKRRTGILK KAKELSILCD IHIILLMFSP TGKPTLFHGE 60 RSTIEEVIAK FAQLTPQERA KRKLESLEAL KKTFKKLDHD LNIQDFLGAT QSVEEMTNEV 120 SMLQARLNEV HKRLSYWNNP DKIDNIEHLR QMENSLRESI ERIRIHKENY GKHHLLPLES 180 TSQFQNAMPL PVMIGGVQEA QPVTWLPNNG NQQMLLHNES NFLPNLDTEC ATDGSLAGYS 240 GFFVPGKQTD IGNSVQVDNT IQESNVLNDL GNNAFLNSQL GNLQGDPRVY QVITDFEAPR 300 PMSNGGHQAW ISSSGPCGIA MFDGNSYHQE LNLPAKSLIQ IVVYRSKQNR LL

Sequence ? help Back to Top

Protein Sequence Length: 352 aa Download sequence Send to blast

MGRVKLKIKR LESYSNRQVT YSKRRTGILK KAKELSILCD IHIILLMFSP TGKPTLFHGE  60
RSTIEEVIAK FAQLTPQERA KRKLESLEAL KKTFKKLDHD LNIQDFLGAT QSVEEMTNEV  120
SMLQARLNEV HKRLSYWNNP DKIDNIEHLR QMENSLRESI ERIRIHKENY GKHHLLPLES  180
TSQFQNAMPL PVMIGGVQEA QPVTWLPNNG NQQMLLHNES NFLPNLDTEC ATDGSLAGYS  240
GFFVPGKQTD IGNSVQVDNT IQESNVLNDL GNNAFLNSQL GNLQGDPRVY QVITDFEAPR  300
PMSNGGHQAW ISSSGPCGIA MFDGNSYHQE LNLPAKSLIQ IVVYRSKQNR LL

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6byy_A	2e-14	1	92	1	90	MEF2 CHIMERA
6byy_B	2e-14	1	92	1	90	MEF2 CHIMERA
6byy_C	2e-14	1	92	1	90	MEF2 CHIMERA
6byy_D	2e-14	1	92	1	90	MEF2 CHIMERA
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Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Expressed in pollen. {ECO:0000269\|PubMed:12949148}.

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor that forms a heterodimer with the MADS-box protein AGL104 and is involved in the regulation of pollen maturation at the late stages of pollen development and pollen tube growth. {ECO:0000269\|PubMed:19211705}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012438773.1	0.0	PREDICTED: MADS-box protein defh21-like isoform X4
Swissprot	Q7X9I0	1e-105	AGL65_ARATH; Agamous-like MADS-box protein AGL65
TrEMBL	A0A1U8M5U5	0.0	A0A1U8M5U5_GOSHI; agamous-like MADS-box protein AGL65 isoform X1
STRING	Gorai.008G194100.1	0.0	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM5933	25	43

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G18750.1	1e-107	AGAMOUS-like 65

Publications ? help Back to Top
Zhang S, et al. FERTILIZATION-INDEPENDENT SEED-Polycomb Repressive Complex 2 Plays a Dual Role in Regulating Type I MADS-Box Genes in Early Endosperm Development. Plant Physiol., 2018. 177(1): p. 285-299 [PMID:29523711]