PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gh_D12G1755

Organism

Gossypium hirsutum

Taxonomic ID

3635

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

Dof

Protein Properties

Length: 504aa MW: 54880.3 Da PI: 4.9138

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gh_D12G1755	genome	NAU-NBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	126.5	7.8e-40	149	208	2	61
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkks 61 ++++l+cprC+s++tkfCyynny+++qPr+fCkaC+ryWt+GG++rnvPvG+grrknk+s Gh_D12G1755 149 PDQILPCPRCNSMDTKFCYYNNYNINQPRHFCKACQRYWTAGGTMRNVPVGAGRRKNKNS 208 7899*****************************************************986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	2.0E-30	142	206	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	2.6E-32	150	207	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	28.826	153	207	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	155	191	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 504 aa Download sequence Send to blast
MQESKDPGIK LFGKKIHLPA DGEISTLSVD EFDKAQCGNR VVDDEDYEEF DDDDDDDGGG 60 GDGDEEEDEQ KDKTEQDSLA EQIADTGQED DNIQPSNREE STNPETSPEP NVNPKTPSID 120 EETGKSKTGK TDKEQSDGSK SQEKTLKKPD QILPCPRCNS MDTKFCYYNN YNINQPRHFC 180 KACQRYWTAG GTMRNVPVGA GRRKNKNSAL HYRHISFSEA LQAARIDAPN AAHHPALKSN 240 GRVLSFGLDA PICDSMASVL NLGEKKVLNG ARDGFHGLEE QRVSVPNRRE NGDDCSSGSS 300 ITVSNSMEEG GRSCIQENRM GNINGFPSPI PCLPGVPWPY PWNSTVPPPA FCPSGFPMSF 360 YPAAAYWNCG IPGTWNVPWL SPQSSSTSSN QTAPTSGPNS PTLGKHSREG DMAKLDDSEK 420 QKATKQKNGC VLVPKTLRID DPSEAAKSSI WATLGIKNES LSGGGLFKAF HPKSDEKNHV 480 AEASPVLRAN PAALSRSLNF HESS

Sequence ? help Back to Top

Protein Sequence Length: 504 aa Download sequence Send to blast

MQESKDPGIK LFGKKIHLPA DGEISTLSVD EFDKAQCGNR VVDDEDYEEF DDDDDDDGGG  60
GDGDEEEDEQ KDKTEQDSLA EQIADTGQED DNIQPSNREE STNPETSPEP NVNPKTPSID  120
EETGKSKTGK TDKEQSDGSK SQEKTLKKPD QILPCPRCNS MDTKFCYYNN YNINQPRHFC  180
KACQRYWTAG GTMRNVPVGA GRRKNKNSAL HYRHISFSEA LQAARIDAPN AAHHPALKSN  240
GRVLSFGLDA PICDSMASVL NLGEKKVLNG ARDGFHGLEE QRVSVPNRRE NGDDCSSGSS  300
ITVSNSMEEG GRSCIQENRM GNINGFPSPI PCLPGVPWPY PWNSTVPPPA FCPSGFPMSF  360
YPAAAYWNCG IPGTWNVPWL SPQSSSTSSN QTAPTSGPNS PTLGKHSREG DMAKLDDSEK  420
QKATKQKNGC VLVPKTLRID DPSEAAKSSI WATLGIKNES LSGGGLFKAF HPKSDEKNHV  480
AEASPVLRAN PAALSRSLNF HESS

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Ghi.16004	0.0	boll\| ovule\| stem

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Expressed in the vasculature of cotyledons and hypocotyls, leaves and roots. {ECO:0000269\|PubMed:19619493}.

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that binds specifically to a 5'-AA[AG]G-3' consensus core sequence (By similarity). Regulates a photoperiodic flowering response. Transcriptional repressor of 'CONSTANS' expression. {ECO:0000250, ECO:0000269\|PubMed:19619493}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00394	DAP	Transfer from AT3G47500	Download

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Circadian-regulation. Highly expressed at the beginning of the light period, then decreases, reaching a minimum between 16 and 29 hours after dawn before rising again at the end of the day. {ECO:0000269\|PubMed:19619493}.

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	GQ393639	2e-94	GQ393639.1 Gossypium hirsutum cultivar Deltapine 33 B clone MONCS0604 SSR marker CGR5655 genomic sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016736382.1	0.0	PREDICTED: cyclic dof factor 3-like
Swissprot	Q8LFV3	1e-129	CDF3_ARATH; Cyclic dof factor 3
TrEMBL	A0A1U8NBH7	0.0	A0A1U8NBH7_GOSHI; cyclic dof factor 3-like
STRING	Gorai.008G193700.1	0.0	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM5441	28	48

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G47500.1	1e-122	cycling DOF factor 3

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Corrales AR, et al. Multifaceted role of cycling DOF factor 3 (CDF3) in the regulation of flowering time and abiotic stress responses in Arabidopsis. Plant Cell Environ., 2017. 40(5): p. 748-764 [PMID:28044345] Renau-Morata B, et al. Ectopic Expression of CDF3 Genes in Tomato Enhances Biomass Production and Yield under Salinity Stress Conditions. Front Plant Sci, 2017. 8: p. 660 [PMID:28515731] Henriques R, et al. The antiphasic regulatory module comprising CDF5 and its antisense RNA FLORE links the circadian clock to photoperiodic flowering. New Phytol., 2017. 216(3): p. 854-867 [PMID:28758689]