PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Gh_D12G1740 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | bHLH | ||||||||
Protein Properties | Length: 87aa MW: 9678.9 Da PI: 5.6649 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 18 | 5.1e-06 | 11 | 54 | 14 | 55 |
HHHHHHHHHHHCTSCCC...TTS-..STCHHHHHHHHHHHHHHH CS HLH 14 driNsafeeLrellPkaskapskK..lsKaeiLekAveYIksLq 55 d++N + +L +llP++ ++++++ s iL++++ Y++ Lq Gh_D12G1740 11 DELNALILRLGTLLPQLNHGRHGRasSSTTKILKETCSYVRRLQ 54 679*************7777777745677889***********9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47459 | 1.28E-7 | 11 | 73 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 1.5E-7 | 11 | 67 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 87 aa Download sequence Send to blast |
MSGASNKITD DELNALILRL GTLLPQLNHG RHGRASSSTT KILKETCSYV RRLQKEVDDL 60 SERLSQCLDS MDISSSDAEF LTNLLQQ |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in roots, leaves, stems and flowers. {ECO:0000269|PubMed:16527868}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Atypical and probable non DNA-binding bHLH transcription factor that integrates multiple signaling pathways to regulate cell elongation and plant development. Regulates light responses by binding and inhibiting the activity of the bHLH transcription factor HFR1, a critical regulator of light signaling and shade avoidance. May have a regulatory role in various aspects of gibberellin-dependent growth and development. {ECO:0000269|PubMed:16527868, ECO:0000269|PubMed:20305124}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Not induced by exogenous gibberellin. {ECO:0000269|PubMed:16527868}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012435732.1 | 5e-57 | PREDICTED: transcription factor ILI3-like | ||||
Refseq | XP_016737698.1 | 5e-57 | PREDICTED: transcription factor ILI3-like | ||||
Swissprot | F4JCN9 | 9e-20 | PRE4_ARATH; Transcription factor PRE4 | ||||
TrEMBL | A0A0D2T8R1 | 1e-55 | A0A0D2T8R1_GOSRA; Uncharacterized protein | ||||
TrEMBL | A0A1U8NI69 | 1e-55 | A0A1U8NI69_GOSHI; transcription factor ILI3-like | ||||
TrEMBL | A0A2P5S1Z4 | 1e-55 | A0A2P5S1Z4_GOSBA; Uncharacterized protein | ||||
STRING | Gorai.008G192000.1 | 2e-56 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM18351 | 4 | 8 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G47710.1 | 4e-22 | BANQUO 3 |
Publications ? help Back to Top | |||
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