PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_D12G1622
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family ERF
Protein Properties Length: 348aa    MW: 39219.6 Da    PI: 4.4033
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_D12G1622genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP260.83.1e-194797256
          AP2  2 gykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkklege 56
                 ++ GVr+++ +grWvAeI+d      ++ r++lg+++taeeAa+a+++a+  l+ge
  Gh_D12G1622 47 RFVGVRQRP-SGRWVAEIKDtI----QKIRVWLGTYDTAEEAARAYDEAAYLLRGE 97
                 789******.7*********33....35***********************99997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000186.83E-3146103No hitNo description
PfamPF008473.2E-144797IPR001471AP2/ERF domain
PROSITE profilePS5103220.03347104IPR001471AP2/ERF domain
SuperFamilySSF541711.44E-1947104IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.104.2E-2747103IPR001471AP2/ERF domain
SMARTSM003802.3E-3447110IPR001471AP2/ERF domain
PRINTSPR003679.9E-84859IPR001471AP2/ERF domain
PRINTSPR003679.9E-87086IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 348 aa     Download sequence    Send to blast
MEKRKVMATD VNDEEKGNNN VDEKAAMDAN VAAVAAALSG GHRARKRFVG VRQRPSGRWV  60
AEIKDTIQKI RVWLGTYDTA EEAARAYDEA AYLLRGENTR TNFWPFSPSS ISKPALPSKI  120
ANLLLLRLKA RNDAASASSN MPPNFPLNQL DTICFDDFFN VPEDCSTSSS DCMLESFGST  180
CADPKSLHLE DNNNVDGNPD YVGSKEDIDI MDFQFLDSFG SSCDYRSPFE IAEEMVEPME  240
KQQEDINGDD LDPCMLRETM KRMKYERKFS ASLYAFNGIP ECLRLKQRES ENNHNIQQQC  300
QPSNLRNSNS CENEMRLEFK EEDDQGIGSS SACEMWSLPD LPSITFIN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A1e-14471031471Ethylene-responsive transcription factor ERF096
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016733074.10.0PREDICTED: ethylene-responsive transcription factor RAP2-11-like
TrEMBLA0A2P5RQC50.0A0A2P5RQC5_GOSBA; Uncharacterized protein
STRINGGorai.008G178900.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM1961567
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G19790.15e-15related to AP2 11