PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_D12G1583
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family bHLH
Protein Properties Length: 297aa    MW: 32849.2 Da    PI: 6.5362
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_D12G1583genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH42.61.1e-1354103255
                  HHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
          HLH   2 rrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                  r +h+  E+rRR++iN +f+ Lr+ +P+     ++K + a+ L +++eY++ Lq
  Gh_D12G1583  54 RSKHSVTEQRRRSKINARFQILRDRIPNT----DQKRDTASFLLEVIEYVQFLQ 103
                  899*************************8....8*******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474597.72E-1850124IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.3E-2150124IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000834.86E-1351107No hitNo description
PROSITE profilePS5088815.16752102IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000104.7E-1154103IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.1E-1058108IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS516718.589230297IPR002912ACT domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008152Biological Processmetabolic process
GO:0016597Molecular Functionamino acid binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 297 aa     Download sequence    Send to blast
MRRGKASQEE EEFGSKKTGP SSFHTLSVNA NTNTNTNINN EADGKDSDKA KAIRSKHSVT  60
EQRRRSKINA RFQILRDRIP NTDQKRDTAS FLLEVIEYVQ FLQEKVQKYE GSYQGWSSEP  120
TKLMPWRNSH WCGQSFVDQP QAIKNDPGLG STFSGKLDEN NINITPSMIA SALDPSEADP  180
IRDNEQAELA VPIQGGHPLQ RPVSEAQTTE CLTSNDTLNQ QDDLAIEGGT ISISSVYSQG  240
LLNTLTQALQ RTGLDLSQAN ISVQIDLGKR SNRGLTSSTK ESANGEDSNP VQKRLKK
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ghi.207671e-151boll
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed constitutively in roots, leaves, stems, and flowers. {ECO:0000269|PubMed:12679534}.
Functional Description ? help Back to Top
Source Description
UniProtPositive brassinosteroid-signaling protein.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Repressed by heat treatment. {ECO:0000269|PubMed:12679534}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016736123.10.0PREDICTED: transcription factor BIM2-like isoform X1
SwissprotQ9CAA41e-101BIM2_ARATH; Transcription factor BIM2
TrEMBLA0A1U8NDS40.0A0A1U8NDS4_GOSHI; transcription factor BIM2-like isoform X1
STRINGGorai.008G175100.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM59872745
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69010.11e-101BES1-interacting Myc-like protein 2
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]