PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Gh_D12G1464 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | ERF | ||||||||
Protein Properties | Length: 366aa MW: 39723.6 Da PI: 7.6074 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 57.2 | 4.2e-18 | 59 | 108 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 +y+GVr+++ +gr++AeIrdp++ + r +lg+f+taeeAa a++ a+++++g Gh_D12G1464 59 KYRGVRRRP-WGRYAAEIRDPKS---KERRWLGTFDTAEEAACAYDCAARAMRG 108 8********.**********843...4999**********************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF00847 | 3.5E-11 | 59 | 108 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 22.155 | 59 | 116 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 1.19E-30 | 59 | 115 | No hit | No description |
SuperFamily | SSF54171 | 2.75E-21 | 59 | 116 | IPR016177 | DNA-binding domain |
Gene3D | G3DSA:3.30.730.10 | 1.4E-29 | 59 | 115 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 4.6E-34 | 59 | 124 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 2.0E-9 | 60 | 71 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 2.0E-9 | 82 | 98 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009733 | Biological Process | response to auxin | ||||
GO:0009880 | Biological Process | embryonic pattern specification | ||||
GO:0048825 | Biological Process | cotyledon development | ||||
GO:0051726 | Biological Process | regulation of cell cycle | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 366 aa Download sequence Send to blast |
MEEVVRRLNG IPHVPDPHPH SILNPIQCSA STTAVPTNTT TTSKKRFLKE NGGPGGTIKY 60 RGVRRRPWGR YAAEIRDPKS KERRWLGTFD TAEEAACAYD CAARAMRGMK ARTNFVYPVT 120 DPHSPNGPFL PPFNFSNPSQ LSIGDLNRTR YQFGHSSNRP LFAKPPHSLV HHLPFINGTS 180 SSSLSSSFPT PSVLPATTFF NSSPSSSLWL SDNSTGPFTA STMTLPLKDK NSSVATVVPA 240 PAISTCQADD MGMGLFFPQG PSDSGLLEEI IQGFLPNPTS GNSGLVCSTT SNCTQHSIVS 300 PPTEMSFTGL NLKEIKNESL GFYMDYHPQL ESLNGIANSQ VVPNSNEIPL GHLQLGQDSM 360 PDDIFQ |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5wx9_A | 2e-20 | 59 | 126 | 14 | 76 | Ethylene-responsive transcription factor ERF096 |
Search in ModeBase |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016732853.1 | 0.0 | PREDICTED: ethylene-responsive transcription factor ESR2-like | ||||
TrEMBL | A0A1U8N4V5 | 0.0 | A0A1U8N4V5_GOSHI; ethylene-responsive transcription factor ESR2-like | ||||
STRING | Gorai.008G161000.1 | 0.0 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM7355 | 25 | 41 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G12980.1 | 2e-26 | ERF family protein |