PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gh_D12G1443

Organism

Gossypium hirsutum

Taxonomic ID

3635

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

bHLH

Protein Properties

Length: 470aa MW: 53475.4 Da PI: 8.5206

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gh_D12G1443	genome	NAU-NBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	35.9	1.3e-11	287	330	7	55
HHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS HLH 7 erErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 + Er+RR++i++++++Lr l+Pk + K++ +iL+ A+eYI +Lq Gh_D12G1443 287 ITERNRRKKIKDGLFKLRALVPKiS------KMDITAILTDAMEYIGNLQ 330 68*******************66......**************998 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF14215	6.4E-18	11	158	IPR025610	Transcription factor MYC/MYB N-terminal
SuperFamily	SSF47459	4.06E-13	276	342	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	12.919	280	329	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	3.21E-10	283	334	No hit	No description
SMART	SM00353	4.7E-11	286	335	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	1.9E-13	287	344	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	6.3E-9	287	330	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 470 aa Download sequence Send to blast
MRGFERAVEW LRSFVYSNAW DFCVVWKLGD DPSRFIEWKD CCCSGGINVK VEQDKLQLQG 60 PPLCRDAQFQ HSIRSKACEA LSHFPFSVSL YAGENRIHGE VAISSQPKWL NHANISTSLS 120 SEETMGTQVL IPVFGGLIEL FASKNIPKDQ NIIELIRTEC NALLKAETTT AESYRKANLH 180 KWYLNTLQEK DLPFSMSLST VNPRIQFIPS IGHPPFSSAS AYISQDEQLK QPIGTYYGTK 240 RLGCSQNVCA QQTEIGIVLD CKVNSVNDKM RTAKQPEKVN YHSKNLITER NRRKKIKDGL 300 FKLRALVPKI SKMDITAILT DAMEYIGNLQ EEEKKLRNEL KETEEGDCGK SNAELKSTKL 360 DWLQRKNMST IEENHILSGI SEMAKIEVHV EVNQITKREF WIKLCYKHKR SGFAKLMEGM 420 DSLGLGVIDA NITTFNGNVL NIFKVEGFRV QAIERLVDPP NKLDKQRYTV

Sequence ? help Back to Top

Protein Sequence Length: 470 aa Download sequence Send to blast

MRGFERAVEW LRSFVYSNAW DFCVVWKLGD DPSRFIEWKD CCCSGGINVK VEQDKLQLQG  60
PPLCRDAQFQ HSIRSKACEA LSHFPFSVSL YAGENRIHGE VAISSQPKWL NHANISTSLS  120
SEETMGTQVL IPVFGGLIEL FASKNIPKDQ NIIELIRTEC NALLKAETTT AESYRKANLH  180
KWYLNTLQEK DLPFSMSLST VNPRIQFIPS IGHPPFSSAS AYISQDEQLK QPIGTYYGTK  240
RLGCSQNVCA QQTEIGIVLD CKVNSVNDKM RTAKQPEKVN YHSKNLITER NRRKKIKDGL  300
FKLRALVPKI SKMDITAILT DAMEYIGNLQ EEEKKLRNEL KETEEGDCGK SNAELKSTKL  360
DWLQRKNMST IEENHILSGI SEMAKIEVHV EVNQITKREF WIKLCYKHKR SGFAKLMEGM  420
DSLGLGVIDA NITTFNGNVL NIFKVEGFRV QAIERLVDPP NKLDKQRYTV

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016735947.1	0.0	PREDICTED: transcription factor bHLH90-like isoform X1
TrEMBL	A0A1U8NA25	0.0	A0A1U8NA25_GOSHI; transcription factor bHLH90-like isoform X1
STRING	Gorai.008G159000.1	0.0	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM6985	27	42

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G10610.1	2e-69	bHLH family protein