PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_D12G1391
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family ERF
Protein Properties Length: 420aa    MW: 47244.6 Da    PI: 5.8265
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_D12G1391genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2621.3e-19201251256
          AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 
                   y+GVr+++ +g+WvAeIr p++   r+r +lg+f+taeeAa a+++ + kl+ge
  Gh_D12G1391 201 LYRGVRQRH-WGKWVAEIRLPRN---RTRLWLGTFDTAEEAALAYDREAFKLRGE 251
                  59******9.**********955...5**************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000183.68E-35200260No hitNo description
SuperFamilySSF541715.49E-23201259IPR016177DNA-binding domain
PROSITE profilePS5103223.103201258IPR001471AP2/ERF domain
SMARTSM003809.0E-41201264IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.103.5E-32201259IPR001471AP2/ERF domain
PRINTSPR003674.5E-11202213IPR001471AP2/ERF domain
PfamPF008473.1E-13202251IPR001471AP2/ERF domain
PRINTSPR003674.5E-11224240IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 420 aa     Download sequence    Send to blast
MAAANNIGKS KTGDGDEAIK MPRDQVLEIG KDKNVDFGLE RHEWRPVFYE ASMSKRPIKK  60
IRSPEREASF QFSASLPHQS SSCSVSSDAS FQPSRLVLPY AFDASQQPMY LSQQYGNNPT  120
LLPLPQHQQH MVSFTPQQQH DGVYQPMFSG ESSLPPQQLV QYWSNVLNLS PRGSLMMMSR  180
LGQNRRQLLR SPVQPINATK LYRGVRQRHW GKWVAEIRLP RNRTRLWLGT FDTAEEAALA  240
YDREAFKLRG ENARLNFPEL FVNKDKVTST APSSPVSSPQ TPHQSSKPNQ TQNLPQQEPE  300
EDQDLQSVEM ETVRPPEGDN PDSSSGMTTE GFGAGEGVCS CEEMEWGAMA EAWFNAIPAG  360
FGPGSPVWDD LDTTNNLLFP SNLPFTHQNQ NQLDSDLSKQ HNSASSPSCP MKHFFWKDED
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A1e-20200258160ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016735869.10.0PREDICTED: ethylene-responsive transcription factor ERF054-like
TrEMBLA0A1U8NDH60.0A0A1U8NDH6_GOSHI; ethylene-responsive transcription factor ERF054-like
STRINGGorai.008G153600.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM21412775
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G20880.11e-53ERF family protein