PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gh_D12G1333

Organism

Gossypium hirsutum

Taxonomic ID

3635

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

MYB

Protein Properties

Length: 289aa MW: 31289.6 Da PI: 6.5888

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gh_D12G1333	genome	NAU-NBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	33.8	7.7e-11	11	54	3	44
SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrw 44 W+ e d+ + +a + ++ + +W++Ia+ ++ g+tl+++k ++ Gh_D12G1333 11 EWSREQDKAFENALATYPEDtsdRWEKIAADVP-GKTLEEIKQHY 54 7******************************.********9 PP
2	Myb_DNA-binding	43.9	5.7e-14	122	166	3	47
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +WT++E+ l++ + +++G+g+W++I+r + +Rt+ q+ s+ qky Gh_D12G1333 122 AWTEDEHRLFLLGLEKYGKGDWRSISRNFVVTRTPTQVASHAQKY 166 6*******************************************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51293	9.604	7	62	IPR017884	SANT domain
SMART	SM00717	1.8E-10	8	60	IPR001005	SANT/Myb domain
SuperFamily	SSF46689	6.7E-12	10	66	IPR009057	Homeodomain-like
Pfam	PF00249	2.9E-8	11	54	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	2.4E-5	11	55	IPR009057	Homeodomain-like
CDD	cd00167	1.57E-9	11	57	No hit	No description
PROSITE profile	PS51294	17.61	114	171	IPR017930	Myb domain
SuperFamily	SSF46689	8.28E-17	117	172	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	1.4E-17	119	169	IPR006447	Myb domain, plants
SMART	SM00717	4.5E-11	119	169	IPR001005	SANT/Myb domain
Pfam	PF00249	7.1E-12	122	166	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	5.0E-11	122	165	IPR009057	Homeodomain-like
CDD	cd00167	1.19E-10	122	167	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 289 aa Download sequence Send to blast
MTVDEASNSS EWSREQDKAF ENALATYPED TSDRWEKIAA DVPGKTLEEI KQHYELLEDD 60 VNRIESGCVP LPAYSSSEGS TCHAGDEVTS KKGSDHLGHF NSESDHGSKN SRSDQERRKG 120 IAWTEDEHRL FLLGLEKYGK GDWRSISRNF VVTRTPTQVA SHAQKYFIRL NSINKDRRRS 180 SIHDITSVGN GEILATQGPI TGEPNGAATG GSSAKSAKQP SQLPAAPPGV SMYSSPTIGQ 240 PIGGPLVSTV GTPVNLPAPP HLAYGAVVPT APMNMGPVKY SMPHKSDHR

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
2cjj_A	1e-18	12	80	11	79	RADIALIS
Search in ModeBase

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Ghi.20090	0.0	boll\| ovule

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Expressed in young seedlings, developing leaves, sepals and trichomes. {ECO:0000269\|PubMed:26243618}.

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator that coordinates abscisic acid (ABA) biosynthesis and signaling-related genes via binding to the specific promoter motif 5'-(A/T)AACCAT-3'. Represses ABA-mediated salt (e.g. NaCl and KCl) stress tolerance. Regulates leaf shape and promotes vegetative growth. {ECO:0000269\|PubMed:26243618}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Induced by salicylic acid (SA) and gibberellic acid (GA) (PubMed:16463103). Triggered by dehydration and salt stress (PubMed:26243618). {ECO:0000269\|PubMed:16463103, ECO:0000269\|PubMed:26243618}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016735782.1	0.0	PREDICTED: transcription factor DIVARICATA-like
Refseq	XP_016735783.1	0.0	PREDICTED: transcription factor DIVARICATA-like
Refseq	XP_016735784.1	0.0	PREDICTED: transcription factor DIVARICATA-like
Swissprot	Q9FNN6	1e-125	SRM1_ARATH; Transcription factor SRM1
TrEMBL	A0A1U8ND63	0.0	A0A1U8ND63_GOSHI; transcription factor DIVARICATA-like
STRING	Gorai.008G147400.1	0.0	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM3556	28	61

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G08520.1	1e-123	MYB family protein

Publications ? help Back to Top
Wang T, et al. Salt-Related MYB1 Coordinates Abscisic Acid Biosynthesis and Signaling during Salt Stress in Arabidopsis. Plant Physiol., 2015. 169(2): p. 1027-41 [PMID:26243618] Chen YS, et al. Two MYB-related transcription factors play opposite roles in sugar signaling in Arabidopsis. Plant Mol. Biol., 2017. 93(3): p. 299-311 [PMID:27866313]