PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_D12G1237
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family MYB
Protein Properties Length: 225aa    MW: 26265.2 Da    PI: 5.0513
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_D12G1237genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding54.52.6e-17552148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g WT+eEd  l+ +v+++G g+W++ ar  g++Rt+k+c++rw++yl
      Gh_D12G1237  5 KGQWTEEEDSMLKAYVTLHGEGRWNSAARFSGLRRTGKSCRLRWLNYL 52
                     799*******************************************97 PP
2Myb_DNA-binding50.64.3e-1658101146
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      rg+ T eE++l+++++  +G++ W++Ia++++ gRt++++k++w++
      Gh_D12G1237  58 RGSITLEEQLLIIQLHSIWGNR-WSKIAEHLP-GRTDNEIKNYWRT 101
                      7889******************.*********.***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129426.2156IPR017930Myb domain
SuperFamilySSF466894.87E-30299IPR009057Homeodomain-like
SMARTSM007171.1E-12454IPR001005SANT/Myb domain
PfamPF002492.3E-14552IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.606.6E-21659IPR009057Homeodomain-like
CDDcd001671.46E-9852No hitNo description
SMARTSM007175.2E-1557105IPR001005SANT/Myb domain
PROSITE profilePS5129419.86457107IPR017930Myb domain
PfamPF002498.7E-1558101IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.605.1E-2260106IPR009057Homeodomain-like
CDDcd001671.54E-1062101No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 225 aa     Download sequence    Send to blast
MDVRKGQWTE EEDSMLKAYV TLHGEGRWNS AARFSGLRRT GKSCRLRWLN YLRPAVRRGS  60
ITLEEQLLII QLHSIWGNRW SKIAEHLPGR TDNEIKNYWR TKVQKQAKKL ECDVNSPKFR  120
DALRYEYTPR LIEQISRAKH ESPSGQLTYG NETESVQVDQ ILLPESSSET QVTYGSTVAE  180
TWGIDEQSNG NGWLGGGDYW MESEWCEENI WFLQQQLYDD EDDVI
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A3e-2321074108B-MYB
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Highly expressed in leaves. Expressed in roots and shoots. Expressed at low levels in flowers. {ECO:0000269|PubMed:22301384}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor involved in abiotic stress responses. Plays a regulatory role in tolerance to salt, cold, and drought stresses. Regulates positively the expression of genes involved in proline synthesis and transport, and genes involved in reactive oxygen species (ROS) scavenging such as peroxidase, superoxide dismutase and catalase during salt stress. Transactivates stress-related genes, including LEA3, RAB16A and DREB2A during salt stress. {ECO:0000269|PubMed:22301384}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by salt, cold and osmotic stresses, and abscisic acid (ABA). Down-regulated by salicylic acid (SA). {ECO:0000269|PubMed:22301384}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJX6094282e-93JX609428.1 Gossypium hirsutum clone NBRI_GE50656 microsatellite sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016737651.11e-166PREDICTED: transcription factor MYB108-like
SwissprotQ10MB47e-68MYB2_ORYSJ; Transcription factor MYB2
TrEMBLA0A1U8NF441e-164A0A1U8NF44_GOSHI; transcription factor MYB108-like
STRINGGorai.008G137300.11e-165(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM4282646
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G48000.14e-67myb domain protein 112
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Yang A,Dai X,Zhang WH
    A R2R3-type MYB gene, OsMYB2, is involved in salt, cold, and dehydration tolerance in rice.
    J. Exp. Bot., 2012. 63(7): p. 2541-56
    [PMID:22301384]
  3. Chen X, et al.
    The NAC family transcription factor OsNAP confers abiotic stress response through the ABA pathway.
    Plant Cell Physiol., 2014. 55(3): p. 604-19
    [PMID:24399239]
  4. Lv Y, et al.
    New insights into the genetic basis of natural chilling and cold shock tolerance in rice by genome-wide association analysis.
    Plant Cell Environ., 2016. 39(3): p. 556-70
    [PMID:26381647]
  5. Hong Y,Zhang H,Huang L,Li D,Song F
    Overexpression of a Stress-Responsive NAC Transcription Factor Gene ONAC022 Improves Drought and Salt Tolerance in Rice.
    Front Plant Sci, 2016. 7: p. 4
    [PMID:26834774]