PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_D12G1207
Common NameWRKY79
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family WRKY
Protein Properties Length: 508aa    MW: 55475.4 Da    PI: 7.4831
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_D12G1207genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY96.12.4e-30278335359
                  -SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
         WRKY   3 DgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                  Dg++WrKYGqK+ kg+++pr+YYrCt+a gCpv+k+v+r+aed++++++tYeg+Hnh+
  Gh_D12G1207 278 DGCQWRKYGQKMAKGNPCPRAYYRCTMAvGCPVRKQVQRCAEDKSILITTYEGNHNHH 335
                  9********************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.806.7E-33261337IPR003657WRKY domain
SuperFamilySSF1182903.66E-27270337IPR003657WRKY domain
PROSITE profilePS5081128.736271337IPR003657WRKY domain
SMARTSM007741.6E-36276336IPR003657WRKY domain
PfamPF031063.1E-26278335IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 508 aa     Download sequence    Send to blast
MEKHHPLPFF HSDDLLRRRS AASDRIHDDS SDDHVKVKPH IMEMDFFSTD HHQDSKINTN  60
ASSSSFDVNT GLNLVSSRTA SDKKSNTEMS VLKIELERLQ EENRRLKSML DHITRNYNEL  120
QGQLFMAVQK QALLAINKQQ VNKEGGVKGM SSHPIMSIQQ SMDPRRPSTT LDVNEPSATD  180
DKRTELSASS PANATTSTMD VVSKDGNDDH HRTVQIQGKH VFVEDVIDQT CQQSWGTSPK  240
SSPMVDEPKK EEEQVPEVAL KKARVSVRAR SEAPMIIDGC QWRKYGQKMA KGNPCPRAYY  300
RCTMAVGCPV RKQVQRCAED KSILITTYEG NHNHHLPPAA TAMAKTTCAA AAMVLSGSTT  360
SNDGQPNSGY FHSSLPYATM ATLSASPPFP TITLDLTQGP NPVPFIRPPP SPSTFPLPLH  420
GYPKLSALPA MQIGQQQQQH TASMVETVTA AIASDPNFTA VLAAAISTFM GAPPPPLPPS  480
NNGNNSTTSQ ALPGSPQLPQ SCTTFSTN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A2e-20267337877Probable WRKY transcription factor 4
2ayd_A2e-20263339176WRKY transcription factor 1
2lex_A2e-20267337877Probable WRKY transcription factor 4
Search in ModeBase
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKF0311150.0KF031115.1 Gossypium hirsutum WRKY transcription factor 103 (WRKY103) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001314429.10.0probable WRKY transcription factor 47
TrEMBLA0A1U8N9750.0A0A1U8N975_GOSHI; probable WRKY transcription factor 47
STRINGGorai.008G134300.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM71562743
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G01720.19e-71WRKY family protein
Publications ? help Back to Top
  1. Dou L, et al.
    Genome-wide analysis of the WRKY gene family in cotton.
    Mol. Genet. Genomics, 2014. 289(6): p. 1103-21
    [PMID:24942461]