PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Gh_D12G1185 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | MYB_related | ||||||||
Protein Properties | Length: 739aa MW: 80488.1 Da PI: 6.4404 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 50.6 | 4.4e-16 | 24 | 68 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 r rWT+eE+ ++++a k++G W +I +++g ++t+ q++s+ qk+ Gh_D12G1185 24 RERWTEEEHNRFLEALKLYGRA-WQRIEEHIG-TKTAVQIRSHAQKF 68 78******************88.*********.************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 5.98E-17 | 18 | 74 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 21.091 | 19 | 73 | IPR017930 | Myb domain |
TIGRFAMs | TIGR01557 | 8.0E-17 | 22 | 71 | IPR006447 | Myb domain, plants |
SMART | SM00717 | 7.3E-13 | 23 | 71 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.3E-8 | 24 | 64 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 3.0E-13 | 24 | 67 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.41E-9 | 26 | 69 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009409 | Biological Process | response to cold | ||||
GO:0009651 | Biological Process | response to salt stress | ||||
GO:0009723 | Biological Process | response to ethylene | ||||
GO:0009733 | Biological Process | response to auxin | ||||
GO:0009737 | Biological Process | response to abscisic acid | ||||
GO:0009739 | Biological Process | response to gibberellin | ||||
GO:0009751 | Biological Process | response to salicylic acid | ||||
GO:0009753 | Biological Process | response to jasmonic acid | ||||
GO:0042754 | Biological Process | negative regulation of circadian rhythm | ||||
GO:0043433 | Biological Process | negative regulation of sequence-specific DNA binding transcription factor activity | ||||
GO:0046686 | Biological Process | response to cadmium ion | ||||
GO:0048574 | Biological Process | long-day photoperiodism, flowering | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0044212 | Molecular Function | transcription regulatory region DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 739 aa Download sequence Send to blast |
MDTYSSGEEL VIKTRKPYTI TKQRERWTEE EHNRFLEALK LYGRAWQRIE EHIGTKTAVQ 60 IRSHAQKFFS KLEKEALAKG VPIGQALDIE IPPPRPKRKP NNPYPRKTGA ATTVQDGAKD 120 GKSETPISSS RCKQVLDLEK EPLPERPNGD EKATNLKENQ DESCSGVFTL LHEANCSSAS 180 SMNKNFIPAS AALKSSCTFR EFVPSPKEVK IHDNGTSTAS NLEYSCTSYD KPAQVQRKDD 240 LDGALCADEM QAAQNFPRHV SVHVLDGSLR TCAQNPSLDM SFQDSVFHPM GDVHGPNLSA 300 NLAASAATEH QNNAPRSTQQ ALPPFHTPFM HLRPNQQDYR SFLHVSSTFS SLIVSTLLQN 360 PAAHAAASFA ARFWPYANIE SSGDSPACGL GGFPSRQFNS APSMAAIAAA TVAAATAWWA 420 AHGLFPVCAP LHTGFTCFPA STAAVPPMEN GQPPAAKTEQ KGKTDQALSL QVEQLDPENS 480 EALQGQHSSS KSPTSSSSDC EERGDAKVNT GVKATDDEMA AEVIEPQDAN KTKNKKQVDR 540 SSCGSNTPSS SEVETDALEK HEKDKEDSKG ADPNHPQVEC SRRSSRSNSN LSDSWKEVSE 600 EGRLAFQALF SREVLPQSFS PPHDGKSKGQ QKENIGEDKQ NPAEEDEEIS TLDLNSKTLG 660 SCSDHQETVK NALSRDKNTT EEGLLTIGLG HSKLKAGRTG FKPYKRCSVE AKENRVMNTG 720 SQGEEKGPKR VRLEGEAST |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Ghi.17648 | 0.0 | boll| ovule| root| stem |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in leaves, roots, stems, flowers and siliques. {ECO:0000269|PubMed:19095940, ECO:0000269|PubMed:19218364}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor involved in the circadian clock. Binds to the promoter region of APRR1/TOC1 and TCP21/CHE to repress their transcription. Represses both CCA1 and itself. {ECO:0000269|PubMed:12015970, ECO:0000269|PubMed:19095940, ECO:0000269|PubMed:19218364, ECO:0000269|PubMed:9657154}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00119 | DAP | Transfer from AT1G01060 | Download |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Circadian-regulation with peak levels occurring around 1 hour after dawn. Up-regulated by APRR1/TOC1 and transiently by light treatment. Down-regulated by APRR5, APRR7 and APRR9. {ECO:0000269|PubMed:12574129, ECO:0000269|PubMed:19095940, ECO:0000269|PubMed:19218364, ECO:0000269|PubMed:19286557, ECO:0000269|PubMed:20233950, ECO:0000269|PubMed:9657154}. |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AY611029 | 1e-99 | AY611029.1 Castanea sativa late elongated hypocotyl (LHY) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012437835.1 | 0.0 | PREDICTED: protein LHY-like isoform X2 | ||||
Swissprot | Q6R0H1 | 1e-158 | LHY_ARATH; Protein LHY | ||||
TrEMBL | A0A2P5RVZ0 | 0.0 | A0A2P5RVZ0_GOSBA; Uncharacterized protein | ||||
STRING | Gorai.008G132000.1 | 0.0 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM5576 | 26 | 45 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G01060.4 | 1e-145 | MYB_related family protein |