PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_D12G1184
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family MYB_related
Protein Properties Length: 736aa    MW: 81219.4 Da    PI: 6.3596
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_D12G1184genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding49.87.6e-162468147
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
                     r rWT+eE+ ++++a k++G   W +I +++g ++t+ q++s+ qk+
      Gh_D12G1184 24 RERWTEEEHNRFLEALKLYGRA-WQRIEEYIG-TKTAVQIRSHAQKF 68
                     78******************88.*********.************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466896.65E-171874IPR009057Homeodomain-like
PROSITE profilePS5129420.7631973IPR017930Myb domain
TIGRFAMsTIGR015574.4E-172271IPR006447Myb domain, plants
SMARTSM007171.6E-122371IPR001005SANT/Myb domain
PfamPF002494.2E-132467IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.0E-82464IPR009057Homeodomain-like
CDDcd001673.17E-92669No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 736 aa     Download sequence    Send to blast
MDTYSSGEEL VIKTRKPYTI TKQRERWTEE EHNRFLEALK LYGRAWQRIE EYIGTKTAVQ  60
IRSHAQKFFS KLEKEALAKG VPIGQALDIE IPPPRPKRKP SNPYPRKTSA ATTVQEGAKD  120
GKSEMPLSSL RCKQMLDLEK EPLPERPTGD EKATNLKENQ DESCSEVFTL LHEQNCSSAS  180
SMNKNFIPMS AALKSSCTFR EFVPLPKEIF HDNGTSKASN LEKSCTSYEK SAQGQRKDDL  240
DGAFCADEMQ AAQNYPRHVA VHVLDGSLRT CVQNPSLGMS FQDSVFHPMG DVHGPNLFAN  300
PAASATTEHQ NNAPKSTHQA LPPFHIPFIH LRPDQEEYRS FLHVSSTFSN LIVSTLLQNP  360
AAHAAASFAA TFWPYANVES SGDSPTNELR GFPSTQTNSA PIMAAIAAAT VAAATAWWTA  420
HGLLPVCAPL HTGFTCAPAS TAAVPPMENG QTPAANMEQK DKTDLALTTQ DERLDPEYSE  480
ALQGQHSASK SPTSSSSDCE ERVDAKANTE VKATDDEKAA EVIEPQDVDK MKNRKQVDRS  540
SCGSNSSSEV ETDMLEKLEK DKEDPKGADP NHPQVECNRR SRSSSNLSDS WKEVSEEGRL  600
AFQALFSREV LPQSFSPPHD GKNKGQQKEN VGADKQNPVE KDRETSTLDL NRKMLDSRSD  660
SQEVEKNALS KDEKKNAEDG LLRIGLGHAK LKASRTGFKP YKRCSVEAKE NRVMNTGSQG  720
EERGPKRVRL EGEAST
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ghi.110500.0boll| ovule| stem
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHQ5261805e-87HQ526180.1 Gossypium herbaceum clone NBRI_E_1400 simple sequence repeat marker, mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012437846.10.0PREDICTED: protein LHY-like isoform X2
TrEMBLA0A0D2PU240.0A0A0D2PU24_GOSRA; Uncharacterized protein
STRINGGorai.008G131800.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM55762645
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G01060.41e-129MYB_related family protein