PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_D12G1160
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family bHLH
Protein Properties Length: 487aa    MW: 54431 Da    PI: 5.4828
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_D12G1160genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH36.68.1e-12306351454
                  HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
          HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                  +h e+Er+RR+++N++f  Lr  +P+       +++Ka+ L  Av YI +L
  Gh_D12G1160 306 NHVEAERQRREKLNHRFYALRAAVPNV-----SRMDKASLLSDAVTYITEL 351
                  799***********************6.....4***************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF142153.9E-5426214IPR025610Transcription factor MYC/MYB N-terminal
CDDcd000833.49E-13300356No hitNo description
SuperFamilySSF474591.22E-16302365IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088816.259302351IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.9E-9306351IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.105.2E-16306366IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.6E-14308357IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 487 aa     Download sequence    Send to blast
MEELIISPSS SSSLVSFSQE TPPSTLQQRL QFMVQNHQEW WTYAIFWQTS NDDHGRLFLA  60
WEDGHFQGTK DTSPKSTPNN NNNNDMYSIQ GLHNERRNVL KGLQALIGDN HDINGSLVDG  120
TDITDAEWFY VMSLTRSFSL GDGVLGKVLS TGSLVWLTGA HELQFNGCER AREAQLHGIR  180
TLVCILTNRG VLELGSSDMI KENCEFVQQV KSLFGFDPNL TSGSTQFLER TISFPDIGLL  240
AGIEEENGGP DNKTIGDLKP GQQSSYVDSE NSDFDCPLLA VNNTENIRTP KKRGRKPCLR  300
RDTPVNHVEA ERQRREKLNH RFYALRAAVP NVSRMDKASL LSDAVTYITE LKSKIKDLES  360
QLRKVCNEKV KVKTIDAMDN QSTTTSEEQA AARPSNSSSA ATARFSDLQL DVKVMGNDDA  420
IIRVQSDNVN YPSATLMSAL RDLEFQVHHA SMSCVNELML QDIVAKIPYG LTSEEAIKSA  480
LLWRLHQ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4rqw_A5e-35252178195Transcription factor MYC3
4rqw_B5e-35252178195Transcription factor MYC3
4rs9_A5e-35252178195Transcription factor MYC3
4yz6_A5e-35252178195Transcription factor MYC3
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ghi.260550.0stem
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJX5912587e-79JX591258.1 Gossypium hirsutum clone NBRI_GE26339 microsatellite sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016735532.10.0PREDICTED: transcription factor MYC2-like
TrEMBLA0A1U8N8V80.0A0A1U8N8V8_GOSHI; transcription factor MYC2-like
STRINGGorai.008G128800.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM30392163
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G17880.16e-83bHLH family protein