PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gh_D12G1111

Organism

Gossypium hirsutum

Taxonomic ID

3635

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

bZIP

Protein Properties

Length: 374aa MW: 40154.7 Da PI: 9.2471

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gh_D12G1111	genome	NAU-NBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	73.2	3.8e-23	255	317	1	63
XXXXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 1 ekelkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklksev 63 e+elkrerrkq+NRe+ArrsR+RK+ae+eeL++kv++L+aeN++L++e+++l+++++kl+ e+ Gh_D12G1111 255 ERELKRERRKQSNRESARRSRLRKQAETEELARKVEALTAENTTLRSEINQLTEKSEKLRLEN 317 89*********************************************************9887 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF07777	6.7E-34	1	94	IPR012900	G-box binding protein, multifunctional mosaic region
Pfam	PF16596	3.0E-19	123	239	No hit	No description
Gene3D	G3DSA:1.20.5.170	1.8E-18	249	314	No hit	No description
Pfam	PF00170	1.5E-21	255	317	IPR004827	Basic-leucine zipper domain
SMART	SM00338	2.5E-22	255	319	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	13.725	257	320	IPR004827	Basic-leucine zipper domain
SuperFamily	SSF57959	3.38E-11	258	314	No hit	No description
CDD	cd14702	1.88E-22	260	309	No hit	No description
PROSITE pattern	PS00036	0	262	277	IPR004827	Basic-leucine zipper domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 374 aa Download sequence Send to blast
MGSSDEGKSS KSDKSSSPAP PDQTNIHVYP DWAAMQAYYG PRVPMPPYYN SAVASGHAPS 60 PYMWGPTQAI MPPYGTTYAT IYPHGGVYVH PTVPMGSHGH GVPSSPKAAP ETPTKFSGNT 120 NGGLMKKLKG FDGLAMSIGN STAENAESGA EPRPSLSAET EGSTDDSDGN TTGADQTRRK 180 RSREGTPAIG VEGNNEARSK PVAALEATAT ISPKPVGSVL PSGMTTSLEL SNPPAKSSPT 240 NVPRVMTSEI WLQNERELKR ERRKQSNRES ARRSRLRKQA ETEELARKVE ALTAENTTLR 300 SEINQLTEKS EKLRLENATL VEGLKNGELG YAKDIIMNKK ADKEGEMYEK KSNSGAKLHQ 360 LFDPSPRADA VAAS

Sequence ? help Back to Top

Protein Sequence Length: 374 aa Download sequence Send to blast

MGSSDEGKSS KSDKSSSPAP PDQTNIHVYP DWAAMQAYYG PRVPMPPYYN SAVASGHAPS  60
PYMWGPTQAI MPPYGTTYAT IYPHGGVYVH PTVPMGSHGH GVPSSPKAAP ETPTKFSGNT  120
NGGLMKKLKG FDGLAMSIGN STAENAESGA EPRPSLSAET EGSTDDSDGN TTGADQTRRK  180
RSREGTPAIG VEGNNEARSK PVAALEATAT ISPKPVGSVL PSGMTTSLEL SNPPAKSSPT  240
NVPRVMTSEI WLQNERELKR ERRKQSNRES ARRSRLRKQA ETEELARKVE ALTAENTTLR  300
SEINQLTEKS EKLRLENATL VEGLKNGELG YAKDIIMNKK ADKEGEMYEK KSNSGAKLHQ  360
LFDPSPRADA VAAS

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	271	277	RRSRLRK
2	271	278	RRSRLRKQ

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Present only in dark grown leaves and roots. {ECO:0000269\|PubMed:8672884}.

Functional Description ? help Back to Top
Source	Description
UniProt	Binds to the G-box motif (5'-CCACGTGG-3') of the rbcS-1A gene promoter. G-box and G-box-like motifs are cis-acting elements defined in promoters of certain plant genes which are regulated by such diverse stimuli as light-induction or hormone control. {ECO:0000269\|PubMed:8672884}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016735515.1	0.0	PREDICTED: G-box-binding factor 3-like isoform X2
Swissprot	P42776	1e-122	GBF3_ARATH; G-box-binding factor 3
TrEMBL	A0A1U8N961	0.0	A0A1U8N961_GOSHI; G-box-binding factor 3-like isoform X2
STRING	Gorai.008G123200.1	0.0	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM3571	26	61

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G46270.1	1e-120	G-box binding factor 3

Publications ? help Back to Top
Obayashi T, et al. ATTED-II: a database of co-expressed genes and cis elements for identifying co-regulated gene groups in Arabidopsis. Nucleic Acids Res., 2007. 35(Database issue): p. D863-9 [PMID:17130150] Song L, et al. A transcription factor hierarchy defines an environmental stress response network. Science, 2017. [PMID:27811239] Ramegowda V, et al. GBF3 transcription factor imparts drought tolerance in Arabidopsis thaliana. Sci Rep, 2017. 7(1): p. 9148 [PMID:28831141]