PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Gh_D12G1042 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | ERF | ||||||||
Protein Properties | Length: 293aa MW: 32415.5 Da PI: 9.0078 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 63.8 | 3.6e-20 | 34 | 84 | 2 | 56 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 ++ GVr+++ +grWvAeI+d s +r r +lg+++t+eeAa+a+++a+++l+ge Gh_D12G1042 34 RFVGVRQRP-SGRWVAEIKDSS---QRVRLWLGTYDTPEEAARAYDEAARALRGE 84 589******.7*********43...36**************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF00847 | 3.6E-15 | 34 | 84 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 7.9E-37 | 34 | 97 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 3.32E-31 | 34 | 91 | No hit | No description |
Gene3D | G3DSA:3.30.730.10 | 1.9E-28 | 34 | 92 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 20.534 | 34 | 91 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 2.9E-7 | 35 | 46 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 5.62E-20 | 35 | 91 | IPR016177 | DNA-binding domain |
PRINTS | PR00367 | 2.9E-7 | 57 | 73 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 293 aa Download sequence Send to blast |
MAGPESTTKT TTVITNTDNT TTTMAQPLTK PTRRFVGVRQ RPSGRWVAEI KDSSQRVRLW 60 LGTYDTPEEA ARAYDEAARA LRGENARTNF ASVNNSSTQP VISGSNGRQN GLSAFSSLKA 120 KLSKNLQSIM ARNGENKSTK SRVSDHFTFA SIFHFRNNQY HTNQDQNIHK VVQPSIVVPR 180 IGNEPPPLPP PQPPLSWDSS SVSDCSNEWI GFRQHGLDSD GSDIGEVSFR DHHGFSDEMM 240 GWVDSPDHHH NTISSRLSSG DYDDDNHGSR SKRFKVSSSV VVPPTFSGSS YHN |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5wx9_A | 6e-14 | 34 | 90 | 14 | 71 | Ethylene-responsive transcription factor ERF096 |
Search in ModeBase |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | JX616081 | 0.0 | JX616081.1 Gossypium hirsutum clone NBRI_GE60472 microsatellite sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016737623.1 | 0.0 | PREDICTED: ethylene-responsive transcription factor ERF087-like | ||||
TrEMBL | A0A1U8NHZ9 | 0.0 | A0A1U8NHZ9_GOSHI; ethylene-responsive transcription factor ERF087-like | ||||
STRING | Gorai.008G116800.1 | 0.0 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM18292 | 8 | 9 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G19790.1 | 7e-17 | related to AP2 11 |