PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_D12G0959
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family ERF
Protein Properties Length: 260aa    MW: 29037.3 Da    PI: 4.949
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_D12G0959genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP262.21.2e-19132182356
          AP2   3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 
                  +kGVr+++ +g+++AeIrdp+ ng  +r++lg++ t+e+Aa a+++a+ +++g+
  Gh_D12G0959 132 FKGVRRRP-WGKYAAEIRDPKRNG--ARIWLGTYETPEDAALAYDRAAFEMRGA 182
                  8*******.**********98776..**************************95 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000181.09E-29131191No hitNo description
SMARTSM003809.4E-37131195IPR001471AP2/ERF domain
PROSITE profilePS5103223.288131189IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.103.0E-31131190IPR001471AP2/ERF domain
PRINTSPR003673.9E-12132143IPR001471AP2/ERF domain
PfamPF008479.8E-14132181IPR001471AP2/ERF domain
SuperFamilySSF541717.19E-23132190IPR016177DNA-binding domain
PRINTSPR003673.9E-12171191IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010200Biological Processresponse to chitin
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 260 aa     Download sequence    Send to blast
MEIISESEFN ILESFHHYLF DDFYETPAAT ITCSSDNGVF VDQPCYNRSL SFSGVFLNES  60
WGDLPLKMDD SEDMVVYNAL RDAANSGWTP SNEVTAAEAV EEVVVSGGEE KEGIVNVERE  120
TNAPLRPRGM NFKGVRRRPW GKYAAEIRDP KRNGARIWLG TYETPEDAAL AYDRAAFEMR  180
GAKAKLNFPH LIGSNTSDPI RVGSRRRSPE PSASTTPYGL RDSSPKPKKR KSASNSADKA  240
TPEVVQLNTW PTFGDQFWII
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A1e-28128195269ATERF1
3gcc_A1e-28128195269ATERF1
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Ubiquitously expressed after ethylene treatment. {ECO:0000269|PubMed:11950980}.
Functional Description ? help Back to Top
Source Description
UniProtActs as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. Involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways. {ECO:0000269|PubMed:11950980}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00311DAPTransfer from AT2G44840Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Strongly induced by wounding. Induced by Pseudomonas syringae tomato (both virulent and avirulent avrRpt2 strains), independently of PAD4. Also induced by methyl jasmonate (MeJA) independently of JAR1, but seems to not be affected by ethylene. Induction by salicylic acid (SA) is controlled by growth and/or developmental conditions, and seems to be more efficient and independent of PAD4 in older plants. {ECO:0000269|PubMed:11950980, ECO:0000269|PubMed:12068110}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016735101.10.0PREDICTED: ethylene-responsive transcription factor 13-like
SwissprotQ8L9K14e-68ERF99_ARATH; Ethylene-responsive transcription factor 13
TrEMBLA0A2P5QG740.0A0A2P5QG74_GOSBA; Uncharacterized protein
STRINGGorai.008G108500.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM10281650
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G44840.17e-67ethylene-responsive element binding factor 13
Publications ? help Back to Top
  1. Maimbo M,Ohnishi K,Hikichi Y,Yoshioka H,Kiba A
    Induction of a small heat shock protein and its functional roles in Nicotiana plants in the defense response against Ralstonia solanacearum.
    Plant Physiol., 2007. 145(4): p. 1588-99
    [PMID:17965181]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]