PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_D12G0934
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family GRAS
Protein Properties Length: 699aa    MW: 76552.8 Da    PI: 6.168
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_D12G0934genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS325.41.1e-993426982374
         GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshltaN 99 
                  +++L+++Ae +++gd  laq +Larl+++ sp g+p+ R+a+yf+eAL+  l        ++ ++s  s++n++ ++ a+k fse+sPi++f+++t+N
  Gh_D12G0934 342 IDQLIQAAELIETGDPVLAQGILARLNHQLSPVGKPFIRAAFYFKEALQLLLPL------NTSNTSVMSNYNMIFKVGAYKSFSEISPIVQFANFTCN 433
                  689**********************************************99998......666777778888************************** PP

         GRAS 100 qaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledl.eleeLrv 196
                  qa+le +eg++rvHiiDfd+++G+QW++L+q+L  R++g+ps++iT+++sp+s++  el  t e+L+++A+e++++f+++++  ++l++   +  L++
  Gh_D12G0934 434 QALLEVFEGCNRVHIIDFDVGYGGQWASLMQELVLRNGGAPSMKITAFASPSSHDDIELGFTIENLKHYASEINMDFDIEIMSLEALNSGsWPLPLHL 531
                  *********************************************************************************85555554413556799 PP

         GRAS 197 kpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgrei 294
                   ++Ea+aVnl +  ++ +      +s  + vL++vk+lsPk+vv  ++ +d+++ +F +++++al+ ys l++sl+a    + ++  k+Er++l+++i
  Gh_D12G0934 532 GENEAIAVNLPIGSFSNY------PSILPLVLRFVKQLSPKIVVSLDRGCDRTDVPFPHHIIHALQSYSGLLESLDAV-NMNLDALEKIERFFLQPSI 622
                  99**********888877......455568*********************************************766.45669999*********** PP

         GRAS 295 vnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
                  +++v  ++++     e+   Wr+ + ++GF+p+++s+++++qa++l+++++ +g++ve+++ slvl+W++r+L+++SaWr
  Gh_D12G0934 623 EKIVLGRHRS----LERRPPWRSLFIQSGFSPLTFSNFTESQAECLIQRTPIRGFHVEKRQSSLVLCWQRRELIAASAWR 698
                  *****99998....88889************************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098544.302315678IPR005202Transcription factor GRAS
PfamPF035143.8E-97342698IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 699 aa     Download sequence    Send to blast
MKAMPVSFEE FQGKGALDFS SSTSSCSDSS LLLQHQHQHH QKEGKWKNKG GDCCYVGSEP  60
IDNNNKTRRK RSPSPSSTLS SSLGGGGSGG GASTDTAGVA ATTTVVSATT NTSQSLDVGK  120
CGLGMEDWES VLSGSPNQDQ SILRLIMGDI DDPSMGLNKI LQPPSGGGGG GGSENMEFNA  180
GFGMVDHGFG FDSITSSVSL INNVDPPISC SDFPVTSNPP SLLPPPPPGV FPQQQSHLQV  240
VDEKPQIFNP QMIINQNQAR FTQNPTMFLP LSYAQLQEHS LLSPPPPKRF NSGGPFSGSG  300
PELYLRRQQQ QQIQMLQQRP ITGKPKIVTD DLANQQLQQA IIDQLIQAAE LIETGDPVLA  360
QGILARLNHQ LSPVGKPFIR AAFYFKEALQ LLLPLNTSNT SVMSNYNMIF KVGAYKSFSE  420
ISPIVQFANF TCNQALLEVF EGCNRVHIID FDVGYGGQWA SLMQELVLRN GGAPSMKITA  480
FASPSSHDDI ELGFTIENLK HYASEINMDF DIEIMSLEAL NSGSWPLPLH LGENEAIAVN  540
LPIGSFSNYP SILPLVLRFV KQLSPKIVVS LDRGCDRTDV PFPHHIIHAL QSYSGLLESL  600
DAVNMNLDAL EKIERFFLQP SIEKIVLGRH RSLERRPPWR SLFIQSGFSP LTFSNFTESQ  660
AECLIQRTPI RGFHVEKRQS SLVLCWQRRE LIAASAWRC
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A5e-333416984375GRAS family transcription factor containing protein, expressed
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ghi.236720.0boll
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in seedlings, roots, leaves, flowers and siliques. {ECO:0000269|PubMed:10341448, ECO:0000269|PubMed:18500650}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHQ5274720.0HQ527472.1 Gossypium herbaceum clone NBRI_A_6925 simple sequence repeat marker, mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017637200.10.0PREDICTED: scarecrow-like protein 6
SwissprotO813161e-170SCL6_ARATH; Scarecrow-like protein 6
TrEMBLA0A2P5QKQ50.0A0A2P5QKQ5_GOSBA; Uncharacterized protein
STRINGGorai.008G106000.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM85742739
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00150.11e-154GRAS family protein
Publications ? help Back to Top
  1. Bari A,Orazova S,Ivashchenko A
    miR156- and miR171-binding sites in the protein-coding sequences of several plant genes.
    Biomed Res Int, 2013. 2013: p. 307145
    [PMID:23936788]
  2. Xue XY, et al.
    Interaction between two timing microRNAs controls trichome distribution in Arabidopsis.
    PLoS Genet., 2014. 10(4): p. e1004266
    [PMID:24699192]