PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Gh_D12G0882 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | Trihelix | ||||||||
Protein Properties | Length: 465aa MW: 53650 Da PI: 6.1798 | ||||||||
Description | Trihelix family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | trihelix | 93.2 | 2.6e-29 | 40 | 124 | 1 | 87 |
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqlea 87 rW++qe+laL+++r+em+ ++r++ k+plWeevs+k++e g++rs+k+Ckek+en+ k+++++keg+++++ + +++++f+qlea Gh_D12G0882 40 RWPRQETLALLKIRSEMDVAFRDSGVKAPLWEEVSRKLAELGYNRSAKKCKEKFENVYKYHRRTKEGRSGKS--NGKNYRFFEQLEA 124 8********************************************************************974..4457*******85 PP | |||||||
2 | trihelix | 106.2 | 2.2e-33 | 304 | 389 | 1 | 87 |
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqlea 87 rW+k+ev aLi++r++++ +++++ k+plWee+s +m++ g+ rs+k+Ckekwen+nk++k++ke++kkr +e+s+tcpyf+ql+a Gh_D12G0882 304 RWPKDEVEALIRLRTNLDMQYQDAGPKGPLWEEISTAMKKLGYDRSAKRCKEKWENMNKYFKRVKESNKKR-PEDSKTCPYFHQLDA 389 8*********************************************************************8.99***********85 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50090 | 7.399 | 33 | 97 | IPR017877 | Myb-like domain |
SMART | SM00717 | 2.7E-4 | 37 | 99 | IPR001005 | SANT/Myb domain |
Pfam | PF13837 | 1.8E-19 | 39 | 125 | No hit | No description |
CDD | cd12203 | 1.42E-23 | 39 | 104 | No hit | No description |
PROSITE profile | PS50090 | 7.793 | 297 | 361 | IPR017877 | Myb-like domain |
Gene3D | G3DSA:1.10.10.60 | 3.2E-5 | 300 | 361 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 4.9E-4 | 301 | 363 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 6.24E-5 | 302 | 374 | IPR009057 | Homeodomain-like |
Pfam | PF13837 | 5.1E-24 | 303 | 390 | No hit | No description |
CDD | cd12203 | 1.16E-24 | 303 | 368 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 465 aa Download sequence Send to blast |
MMENSSFPES NTVGDNVSLE NEEEAKVKNE ESEGNFSGNR WPRQETLALL KIRSEMDVAF 60 RDSGVKAPLW EEVSRKLAEL GYNRSAKKCK EKFENVYKYH RRTKEGRSGK SNGKNYRFFE 120 QLEALDHHPS LVPPASGDIN TSVEPLNVIH DAIPFSVRNP ASNFNETSTS TTSSSSKESD 180 GTRKKKRKLT DFFERLMREM MEKQENLQKK FIEAIEKSEQ DRMAREEAWK VQELARLKRE 240 RELLVQERSI AAAKDAAVLA FLQKFSDQTT SVQLPDISFA VEKVVDRQEN SNGSESYMHL 300 STSRWPKDEV EALIRLRTNL DMQYQDAGPK GPLWEEISTA MKKLGYDRSA KRCKEKWENM 360 NKYFKRVKES NKKRPEDSKT CPYFHQLDAL YKEKTKTIDG SGYELKPEEL LMHMMGAQEE 420 RLHQESATED VESENVNQNR EENRNAEGDA YQIVANDPSP MPIIG |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 183 | 188 | KKKRKL |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Ghi.24549 | 0.0 | embryo| ovule |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor that binds specific DNA sequence. {ECO:0000250}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016734982.1 | 0.0 | PREDICTED: trihelix transcription factor GT-2-like | ||||
Swissprot | Q39117 | 1e-126 | TGT2_ARATH; Trihelix transcription factor GT-2 | ||||
TrEMBL | A0A1U8N792 | 0.0 | A0A1U8N792_GOSHI; trihelix transcription factor GT-2-like | ||||
STRING | Gorai.008G099700.1 | 0.0 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM5995 | 28 | 47 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G76880.1 | 1e-120 | Trihelix family protein |