PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Gh_D12G0701 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | LBD | ||||||||
Protein Properties | Length: 232aa MW: 25431 Da PI: 8.2088 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 99.4 | 3.4e-31 | 2 | 103 | 1 | 97 |
DUF260 1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkae 93 +C++C+vlr++C+++C+l+p++ p++q +++ +v+k+FG++ ++++++a+pe++r+++++sl++eA+ r+ +Pv+Gavg++++++++++q+++e Gh_D12G0701 2 SCNGCRVLRKGCSESCILRPCLqwidsPEAQGHATIFVAKFFGRAGLMSFISAVPESQRSALFQSLLFEACGRTVNPVNGAVGLLWTGNWHVCQAAVE 99 6***********************************************************************************************99 PP DUF260 94 lall 97 ++l+ Gh_D12G0701 100 TVLR 103 8876 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 19.448 | 1 | 107 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 1.3E-26 | 2 | 101 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
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Protein Sequence Length: 232 aa Download sequence Send to blast |
MSCNGCRVLR KGCSESCILR PCLQWIDSPE AQGHATIFVA KFFGRAGLMS FISAVPESQR 60 SALFQSLLFE ACGRTVNPVN GAVGLLWTGN WHVCQAAVET VLREGTVRAV PELMAPSPAS 120 GEKSEATKIA CMLKLQETET KFNSTCRFST SRSKVSPKRI KVEEFSKFQP SDLDLCLTPS 180 STGNRLPDNR RPGTPSLNSE ESVTTTCFER GFADQQQQGG ETDRIKLLNL FV |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Ghi.2811 | 0.0 | boll| ovule |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in young shoots, roots, stems, leaves and flowers. {ECO:0000269|PubMed:12068116}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016734826.1 | 1e-171 | PREDICTED: LOB domain-containing protein 38-like | ||||
Swissprot | Q9SZE8 | 5e-83 | LBD39_ARATH; LOB domain-containing protein 39 | ||||
TrEMBL | A0A1U8N6V2 | 1e-170 | A0A1U8N6V2_GOSHI; LOB domain-containing protein 38-like | ||||
STRING | Gorai.008G081100.1 | 1e-165 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM821 | 28 | 122 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G37540.1 | 2e-85 | LOB domain-containing protein 39 |