PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gh_D12G0641

Organism

Gossypium hirsutum

Taxonomic ID

3635

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

TALE

Protein Properties

Length: 784aa MW: 85232.4 Da PI: 7.5358

Description

TALE family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gh_D12G0641	genome	NAU-NBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	28.1	3.4e-09	550	587	19	54
HHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS Homeobox 19 Fek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 Fe ++yps +++ LA+++gL+++qV++WF N R + Gh_D12G0641 550 FEHflHPYPSDADKLLLARQTGLSKNQVSNWFINARVR 587 664459******************************88 PP
2	BELL	92.2	4.9e-30	427	481	18	72
BELL 18 eVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72 +Vd+rY++y+eq+qtv++sF+ v+g g+a pYt+lA ka+SrhF+cLkdai+ q+ Gh_D12G0641 427 KVDRRYNHYCEQMQTVVNSFDLVMGFGAAVPYTALAKKAMSRHFKCLKDAITAQL 481 7***************************************************996 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00574	5.8E-65	350	479	IPR006563	POX domain
Pfam	PF07526	4.0E-39	355	478	IPR006563	POX domain
PROSITE profile	PS50071	12.584	528	591	IPR001356	Homeobox domain
SMART	SM00389	6.6E-10	531	595	IPR001356	Homeobox domain
CDD	cd00086	7.33E-13	531	592	No hit	No description
SuperFamily	SSF46689	6.42E-17	533	598	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	6.3E-28	534	597	IPR009057	Homeodomain-like
Pfam	PF05920	1.2E-17	548	587	IPR008422	Homeobox KN domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 784 aa Download sequence Send to blast
MGIATSPVTP SILHQIPFQE KSNHSTNSMS QDYHHQAAAG IFSFSNGFER SAMSHQEQHQ 60 QQQQQQHLVR QIRRDKQRVQ GFEPPSLPLV GIESNALPVY EAEGMLSEMF NFPTGVAASA 120 ELLDQHVEPN YRAHRPPGNS NEWFSNRRGV VGGLGLVGES KSHDNRDTLA AQQQHQQLPS 180 FNADSAAAMN LFLMNPQPRS PSPPAPPSSS SNTLHILLPN PSTSLQGFNV SGPAGGTFRT 240 TSTVLSPPQF TWVPNSAHEG DDTGSQLNNS SQIAGVIEGQ GLSLSLSSSL QHLEAAKAEK 300 LRMYYNQEAG SSSAAAAQFH YKNLATHNHH HLQGGVGENH QVHVGFGSSL GMVNVLRNSK 360 YVKAAQELLE EFCSVGRGNF KRNKSGRNNT NPTFNPPGSN GDGGSSSSTK DPLPLSTTDR 420 IEHQRRKVDR RYNHYCEQMQ TVVNSFDLVM GFGAAVPYTA LAKKAMSRHF KCLKDAITAQ 480 LKHSCEALGE KDGAGNSGIT KGETPRLRVL EQSLRQQRAF HQMGIVEQEA WRPQRGLPER 540 SVNILRAWLF EHFLHPYPSD ADKLLLARQT GLSKNQVSNW FINARVRLWK PMVEDMYQQE 600 IKEEDEDNNE GHNSNSAQKS TPSTTAGAAA STPSEPPPTT AAAGGKRSEI NAMENDPSLI 660 AINRQGFSEN QAKQCTHHDT SATNTTIIAT GPPPPTTFKA TATEVAPPFS YGVDGTTTCR 720 RGSIVSADYG TTTRPGIDSD IGSTLIRFGT TTGDVSLTLG LRHAGNMPEN TSSFSVRDVG 780 GLLN

Sequence ? help Back to Top

Protein Sequence Length: 784 aa Download sequence Send to blast

MGIATSPVTP SILHQIPFQE KSNHSTNSMS QDYHHQAAAG IFSFSNGFER SAMSHQEQHQ  60
QQQQQQHLVR QIRRDKQRVQ GFEPPSLPLV GIESNALPVY EAEGMLSEMF NFPTGVAASA  120
ELLDQHVEPN YRAHRPPGNS NEWFSNRRGV VGGLGLVGES KSHDNRDTLA AQQQHQQLPS  180
FNADSAAAMN LFLMNPQPRS PSPPAPPSSS SNTLHILLPN PSTSLQGFNV SGPAGGTFRT  240
TSTVLSPPQF TWVPNSAHEG DDTGSQLNNS SQIAGVIEGQ GLSLSLSSSL QHLEAAKAEK  300
LRMYYNQEAG SSSAAAAQFH YKNLATHNHH HLQGGVGENH QVHVGFGSSL GMVNVLRNSK  360
YVKAAQELLE EFCSVGRGNF KRNKSGRNNT NPTFNPPGSN GDGGSSSSTK DPLPLSTTDR  420
IEHQRRKVDR RYNHYCEQMQ TVVNSFDLVM GFGAAVPYTA LAKKAMSRHF KCLKDAITAQ  480
LKHSCEALGE KDGAGNSGIT KGETPRLRVL EQSLRQQRAF HQMGIVEQEA WRPQRGLPER  540
SVNILRAWLF EHFLHPYPSD ADKLLLARQT GLSKNQVSNW FINARVRLWK PMVEDMYQQE  600
IKEEDEDNNE GHNSNSAQKS TPSTTAGAAA STPSEPPPTT AAAGGKRSEI NAMENDPSLI  660
AINRQGFSEN QAKQCTHHDT SATNTTIIAT GPPPPTTFKA TATEVAPPFS YGVDGTTTCR  720
RGSIVSADYG TTTRPGIDSD IGSTLIRFGT TTGDVSLTLG LRHAGNMPEN TSSFSVRDVG  780
GLLN

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
4xrs_A	4e-16	537	594	1	58	Homeobox protein Meis1
4xrs_B	4e-16	537	594	1	58	Homeobox protein Meis1
Search in ModeBase

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Ghi.20895	0.0	boll

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Expressed in lateral organs. {ECO:0000269\|PubMed:17873098}.

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that establishes leaf shape by repressing growth in specific subdomains of the leaf. Negatively regulates knox homeobox gene KNAT1/BP expression.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016735015.1	0.0	PREDICTED: BEL1-like homeodomain protein 4 isoform X1
Refseq	XP_016735016.1	0.0	PREDICTED: BEL1-like homeodomain protein 4 isoform X1
Swissprot	Q9SW80	1e-150	BLH2_ARATH; BEL1-like homeodomain protein 2
TrEMBL	A0A2P5RXR9	0.0	A0A2P5RXR9_GOSBA; Uncharacterized protein
STRING	Gorai.008G070800.1	0.0	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM2166	24	66

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G36870.2	1e-148	BEL1-like homeodomain 2

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444]