PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_D12G0585
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family MIKC_MADS
Protein Properties Length: 371aa    MW: 42177.1 Da    PI: 7.5508
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_D12G0585genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF92.12.6e-29959151
                 S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
       SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                 krien +nrqvt+skRrngi+KKA+EL vLCda+v++i+fsstgk++e++s
  Gh_D12G0585  9 KRIENATNRQVTYSKRRNGIFKKAQELTVLCDAKVSLIMFSSTGKFHEFIS 59
                 79***********************************************86 PP
2K-box77.43.7e-2671160189
        K-box   1 yqkssgksleeakaeslqqelakLkkeienLq.reqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqe 89 
                  yqk++g++l+ +++e++q+++++Lk+ +++ + +  R+++G dL++L++keLq Le ++++sl  iR++K++++++q+++ +kk  e + 
  Gh_D12G0585  71 YQKTTGTDLWISHYEKMQENYRRLKEINKKSRrEISRQRMGGDLDDLNIKELQALEAKMDSSLVAIRDRKYHVIKTQTDTHRKKVSESNT 160
                  8999**************************994446************************************************988765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006632.941161IPR002100Transcription factor, MADS-box
SMARTSM004326.0E-42160IPR002100Transcription factor, MADS-box
CDDcd002652.31E-39280No hitNo description
SuperFamilySSF554551.57E-36295IPR002100Transcription factor, MADS-box
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
PRINTSPR004048.6E-28323IPR002100Transcription factor, MADS-box
PfamPF003195.4E-241057IPR002100Transcription factor, MADS-box
PRINTSPR004048.6E-282338IPR002100Transcription factor, MADS-box
PRINTSPR004048.6E-283859IPR002100Transcription factor, MADS-box
PfamPF014861.3E-1682157IPR002487Transcription factor, K-box
PROSITE profilePS5129713.26884205IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 371 aa     Download sequence    Send to blast
MGRGKIEIKR IENATNRQVT YSKRRNGIFK KAQELTVLCD AKVSLIMFSS TGKFHEFISP  60
NISTKAFFDL YQKTTGTDLW ISHYEKMQEN YRRLKEINKK SRREISRQRM GGDLDDLNIK  120
ELQALEAKMD SSLVAIRDRK YHVIKTQTDT HRKKVSESNT IKTVAFHSIS RVLIIFEDWN  180
ALQVRNLEER HANLVFDLLS WEEQSGFGGF DNEIFHGDVD KSGTFVSQPR QVHIIQPLSG  240
AEPDSDSPKT TPPISVYISD ISTLLLLAEL YSFSFQLKAL GHKIKILCKS VPPLVKLKSG  300
DECGRSIFTP VAHVLSTNSC ICKNTTDVDT QNGLVDDGLY DNCDCVEVVR EDGSSREIWA  360
EYLLVEVIFA T
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5f28_A1e-14162162MEF2C
5f28_B1e-14162162MEF2C
5f28_C1e-14162162MEF2C
5f28_D1e-14162162MEF2C
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ghi.252260.0ovule
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed during flower development in stamens, petals and carpels (PubMed:17920788). Expressed in fruits and seeds (PubMed:17920788). {ECO:0000269|PubMed:17920788}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in flower development. {ECO:0000250|UniProtKB:Q0HA25}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKC1556470.0KC155647.1 Gossypium hirsutum MADS box protein MADS52 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012436841.11e-136PREDICTED: floral homeotic protein PMADS 1-like isoform X1
SwissprotQ003J22e-82TM6_VITVI; Agamous-like MADS-box protein TM6
TrEMBLA0A0D2PPX71e-135A0A0D2PPX7_GOSRA; Uncharacterized protein
STRINGGorai.008G064900.11e-136(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM52612750
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G54340.18e-58MIKC_MADS family protein
Publications ? help Back to Top
  1. Jaillon O, et al.
    The grapevine genome sequence suggests ancestral hexaploidization in major angiosperm phyla.
    Nature, 2007. 449(7161): p. 463-7
    [PMID:17721507]
  2. Díaz-Riquelme J,Lijavetzky D,Martínez-Zapater JM,Carmona MJ
    Genome-wide analysis of MIKCC-type MADS box genes in grapevine.
    Plant Physiol., 2009. 149(1): p. 354-69
    [PMID:18997115]
  3. Grimplet J,Martínez-Zapater JM,Carmona MJ
    Structural and functional annotation of the MADS-box transcription factor family in grapevine.
    BMC Genomics, 2016. 17: p. 80
    [PMID:26818751]