PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Gh_D12G0543 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | CO-like | ||||||||
Protein Properties | Length: 374aa MW: 41500.4 Da PI: 5.9685 | ||||||||
Description | CO-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-B_box | 18.2 | 5.3e-06 | 17 | 57 | 4 | 38 |
zf-B_box 4 rkCpeHeekelqlfCedCqqllCedClleeHkg......Ht 38 r+C+++ + + +C+ ++ +lC+ C H H+ Gh_D12G0543 17 RICDTCRSAACTVYCRADSAYLCAGCDARVHAAnrvasrHE 57 79******99*****************99995555666665 PP | |||||||
2 | zf-B_box | 30.4 | 8.1e-10 | 59 | 104 | 3 | 42 |
zf-B_box 3 erkCpeHeekelqlfCedCqqllCedClleeHkg......Htvvpl 42 ++C+ +e+ ++ l C+ + lC +C e+H+ H++vp+ Gh_D12G0543 59 VWVCEVCERAPAALLCKADAASLCTTCDAEIHSAnplarrHQRVPI 104 689*****************************66899999**9997 PP | |||||||
3 | CCT | 69.3 | 9.8e-24 | 307 | 350 | 1 | 44 |
CCT 1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 Rea++lRY+eK+ktRkFeK+irY+sRKa+Ae RpR+KGrF+k++ Gh_D12G0543 307 REARVLRYREKKKTRKFEKTIRYASRKAYAEMRPRIKGRFAKRT 350 9*****************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00336 | 1.4E-8 | 14 | 61 | IPR000315 | B-box-type zinc finger |
PROSITE profile | PS50119 | 10.395 | 14 | 61 | IPR000315 | B-box-type zinc finger |
CDD | cd00021 | 4.43E-8 | 17 | 61 | No hit | No description |
PROSITE profile | PS50119 | 11.32 | 57 | 104 | IPR000315 | B-box-type zinc finger |
Pfam | PF00643 | 8.6E-8 | 58 | 104 | IPR000315 | B-box-type zinc finger |
CDD | cd00021 | 9.48E-9 | 60 | 104 | No hit | No description |
SMART | SM00336 | 3.6E-11 | 62 | 104 | IPR000315 | B-box-type zinc finger |
PROSITE profile | PS51017 | 16.519 | 307 | 349 | IPR010402 | CCT domain |
Pfam | PF06203 | 2.1E-17 | 307 | 349 | IPR010402 | CCT domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009658 | Biological Process | chloroplast organization | ||||
GO:0009909 | Biological Process | regulation of flower development | ||||
GO:0045892 | Biological Process | negative regulation of transcription, DNA-templated | ||||
GO:0048576 | Biological Process | positive regulation of short-day photoperiodism, flowering | ||||
GO:0048579 | Biological Process | negative regulation of long-day photoperiodism, flowering | ||||
GO:0005622 | Cellular Component | intracellular | ||||
GO:0005515 | Molecular Function | protein binding | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 374 aa Download sequence Send to blast |
MLKEEISDAG GGNDWARICD TCRSAACTVY CRADSAYLCA GCDARVHAAN RVASRHERVW 60 VCEVCERAPA ALLCKADAAS LCTTCDAEIH SANPLARRHQ RVPILPISGC LYDPLPTDHG 120 CRKMASATET EDGFMCTNGD ETIAEDEDEA ASWLLLNPGK NSTNQNNGFM LAGEVDDYLD 180 LVEYNSSVEN QFTDQHQQQH YGVPHKSYGG DSVVPVQSGE AKDHFQQQQQ QHQNFQYGLD 240 YDASKAAYSY NGSITRTVSL SSVDVGIVPE STMSDISISH PRPPKGTIDL FSGPPTQMPT 300 QLAPMEREAR VLRYREKKKT RKFEKTIRYA SRKAYAEMRP RIKGRFAKRT DVEVEVDQMF 360 STTVITGYGI VPSF |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Ghi.21533 | 0.0 | ovule |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | DEVELOPMENTAL STAGE: Expressed throughout development. | |||||
Uniprot | TISSUE SPECIFICITY: Highly expressed in leaves. Expressed at lower levels in stems, flowers and siliques. Not detected in roots. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Putative transcription factor. Does not affect flowering time. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Expressed with a circadian rhythm showing a peak at dawn. |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KM201661 | 0.0 | KM201661.1 Gossypium raimondii CONSTANS-like 1 protein gene, complete cds. | |||
GenBank | KM201663 | 0.0 | KM201663.1 Gossypium hirsutum cultivar acc. TM-1 CONSTANS-like 1 protein gene, complete cds. | |||
GenBank | KM201665 | 0.0 | KM201665.1 Gossypium hirsutum cultivar ZMS12 CONSTANS-like 1 protein gene, complete cds. | |||
GenBank | KM201667 | 0.0 | KM201667.1 Gossypium hirsutum cultivar SM3 CONSTANS-like 1 protein gene, complete cds. | |||
GenBank | KM201669 | 0.0 | KM201669.1 Gossypium hirsutum cultivar JM CONSTANS-like 1 protein gene, complete cds. | |||
GenBank | KM201679 | 0.0 | KM201679.1 Gossypium hirsutum var. marie-galante CONSTANS-like 1 protein gene, complete cds. | |||
GenBank | KM201687 | 0.0 | KM201687.1 Gossypium barbadense cultivar Pima-1 CONSTANS-like 1 protein gene, complete cds. | |||
GenBank | KM201697 | 0.0 | KM201697.1 Gossypium barbadense var. peruvianum CONSTANS-like 1 protein gene, complete cds. | |||
GenBank | KM201699 | 0.0 | KM201699.1 Gossypium barbadense var. peruvianum CONSTANS-like 1 protein gene, complete cds. | |||
GenBank | KM201701 | 0.0 | KM201701.1 Gossypium barbadense var. brasiliense CONSTANS-like 1 protein gene, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012436773.1 | 0.0 | PREDICTED: zinc finger protein CONSTANS-LIKE 2 | ||||
Swissprot | Q96502 | 1e-156 | COL2_ARATH; Zinc finger protein CONSTANS-LIKE 2 | ||||
TrEMBL | A0A0D2T176 | 0.0 | A0A0D2T176_GOSRA; CONSTANS-like 1 protein | ||||
TrEMBL | A0A0D3R1Q6 | 0.0 | A0A0D3R1Q6_GOSHI; CONSTANS-like 1 protein | ||||
TrEMBL | A0A0D3R2I9 | 0.0 | A0A0D3R2I9_GOSHI; CONSTANS-like 1 protein | ||||
STRING | Gorai.008G059900.1 | 0.0 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM2128 | 26 | 70 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G02380.1 | 1e-123 | CONSTANS-like 2 |
Publications ? help Back to Top | |||
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