PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Gh_D12G0521 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | NF-YC | ||||||||
Protein Properties | Length: 195aa MW: 22770.3 Da PI: 6.8621 | ||||||||
Description | NF-YC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NF-YC | 121.6 | 3.2e-38 | 55 | 153 | 2 | 98 |
NF-YC 2 lksfwekq...iekatdfk.nhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdflvdi 95 l+ fw +q i + + fk h+lPlarik+i+k+++d misa++P+l+skacelfileltlr+wlh+ee krrtl+ +d+++a+ + + fl d+ Gh_D12G0521 55 LELFWYQQmleIHNISAFKsYHQLPLARIKRIMKSNKD--MISADTPILFSKACELFILELTLRAWLHTEEGKRRTLQGCDVSKAIRQEEALHFLFDV 150 789****96656677889978**************998..9********************************************************* PP NF-YC 96 vpr 98 vp Gh_D12G0521 151 VPL 153 *96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47113 | 1.68E-23 | 59 | 148 | IPR009072 | Histone-fold |
Gene3D | G3DSA:1.10.20.10 | 1.6E-27 | 73 | 139 | IPR009072 | Histone-fold |
Pfam | PF00808 | 2.5E-16 | 77 | 138 | IPR003958 | Transcription factor CBF/NF-Y/archaeal histone domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046982 | Molecular Function | protein heterodimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 195 aa Download sequence Send to blast |
MDLNQSMEFT PSATSSPQIH NFMPMTSFML PFHQPSNEDG EEVKQSHLLV QKRSLELFWY 60 QQMLEIHNIS AFKSYHQLPL ARIKRIMKSN KDMISADTPI LFSKACELFI LELTLRAWLH 120 TEEGKRRTLQ GCDVSKAIRQ EEALHFLFDV VPLINHKDDD GKFLEENEHH PVNQPQFPLL 180 DMNAVRIRKS SKIII |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5g49_B | 5e-30 | 62 | 152 | 3 | 94 | NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT C-3 |
Search in ModeBase |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Ubiquitous. {ECO:0000269|PubMed:11250072, ECO:0000269|PubMed:9662544}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters. {ECO:0000250}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012436740.1 | 1e-134 | PREDICTED: nuclear transcription factor Y subunit C-4-like | ||||
Swissprot | Q8LCG7 | 7e-35 | NFYC2_ARATH; Nuclear transcription factor Y subunit C-2 | ||||
TrEMBL | A0A0D2SZV2 | 1e-135 | A0A0D2SZV2_GOSRA; Uncharacterized protein | ||||
STRING | Gorai.008G057500.1 | 1e-136 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM18090 | 7 | 9 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G56170.2 | 3e-37 | nuclear factor Y, subunit C2 |
Publications ? help Back to Top | |||
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