PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Gh_D12G0491 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | ARF | ||||||||
Protein Properties | Length: 1354aa MW: 150830 Da PI: 6.2857 | ||||||||
Description | ARF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 71.8 | 8.6e-23 | 128 | 229 | 1 | 99 |
EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE. CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefe 91 f+k+lt sd++++g +++p++ ae+ +++++ ++l+ +d++ +W++++i+r++++r++lt+GW+ Fv+a++L +gD+v+F ++++ + Gh_D12G0491 128 FCKTLTASDTSTHGGFSVPRRAAEKVfppldfsQQPPA--QELIARDLHDIEWKFRHIFRGQPKRHLLTTGWSVFVSAKRLVAGDSVLFI--WNENNQ 221 99*****************************8544444..48************************************************..788888 PP .EEEEE-S CS B3 92 lvvkvfrk 99 l+++++r+ Gh_D12G0491 222 LLLGIRRA 229 9****997 PP | |||||||
2 | Auxin_resp | 108.8 | 5.8e-36 | 254 | 338 | 1 | 83 |
Auxin_resp 1 aahaastksvFevvYnPr.astseFvvkvekvekalk.vkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 aahaa+t+s F+v+YnPr as+seFv++++k+ ka+ ++vsvGmRf+m fete+ss rr++Gtv+g+sdld+vrWpnS+Wrs+k Gh_D12G0491 254 AAHAAATNSCFTVFYNPRwASPSEFVIPLSKYIKAVFhTRVSVGMRFRMLFETEESSVRRYMGTVTGISDLDQVRWPNSHWRSVK 338 79***************85899************986599******************************************985 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101936 | 4.32E-49 | 112 | 257 | IPR015300 | DNA-binding pseudobarrel domain |
Gene3D | G3DSA:2.40.330.10 | 2.8E-41 | 121 | 243 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 6.47E-21 | 127 | 228 | No hit | No description |
SMART | SM01019 | 8.0E-24 | 128 | 230 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 4.7E-21 | 128 | 229 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 12.407 | 128 | 230 | IPR003340 | B3 DNA binding domain |
Pfam | PF06507 | 2.5E-31 | 254 | 338 | IPR010525 | Auxin response factor |
SuperFamily | SSF54277 | 3.73E-7 | 691 | 772 | No hit | No description |
Pfam | PF02309 | 1.1E-7 | 692 | 782 | IPR033389 | AUX/IAA domain |
PROSITE profile | PS51745 | 24.019 | 698 | 782 | IPR000270 | PB1 domain |
Gene3D | G3DSA:2.60.200.20 | 4.4E-17 | 788 | 920 | IPR000253 | Forkhead-associated (FHA) domain |
CDD | cd00060 | 3.13E-13 | 824 | 918 | No hit | No description |
SuperFamily | SSF49879 | 8.03E-17 | 824 | 927 | IPR008984 | SMAD/FHA domain |
SMART | SM00240 | 1.4E-4 | 832 | 885 | IPR000253 | Forkhead-associated (FHA) domain |
PROSITE profile | PS50006 | 11.095 | 833 | 885 | IPR000253 | Forkhead-associated (FHA) domain |
Pfam | PF00498 | 8.5E-12 | 833 | 909 | IPR000253 | Forkhead-associated (FHA) domain |
CDD | cd00027 | 1.30E-4 | 922 | 989 | No hit | No description |
Gene3D | G3DSA:3.40.50.10190 | 5.4E-6 | 931 | 989 | IPR001357 | BRCT domain |
SuperFamily | SSF52113 | 1.22E-5 | 933 | 991 | IPR001357 | BRCT domain |
PROSITE profile | PS50172 | 9.139 | 938 | 988 | IPR001357 | BRCT domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009725 | Biological Process | response to hormone | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0005515 | Molecular Function | protein binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 1354 aa Download sequence Send to blast |
MKLSASGLGQ QAAHEGENKC LNSELWHACA GPLVCLPTVG SRVVYFPQGH SEQVAATTNK 60 EVDAHIPNYP NLPPQLICQL HNVTMHADVE TDEVYAQMTL QPLTPEEQKD TFLPMELGIP 120 SKQPTNYFCK TLTASDTSTH GGFSVPRRAA EKVFPPLDFS QQPPAQELIA RDLHDIEWKF 180 RHIFRGQPKR HLLTTGWSVF VSAKRLVAGD SVLFIWNENN QLLLGIRRAT RPQTVMPSSV 240 LSSDSMHIGL LAAAAHAAAT NSCFTVFYNP RWASPSEFVI PLSKYIKAVF HTRVSVGMRF 300 RMLFETEESS VRRYMGTVTG ISDLDQVRWP NSHWRSVKVG WDESTAGERQ PRVSLWEIEP 360 LTTFPMYPSL FPLRLKRPWH PGSSSLHDNR DDVSSGLMWL RGGSGESFST FPWMQQRVDP 420 NFPVNDHNLQ YQAMLANGLQ NLGSGDPLRQ QLQQSLPYVQ QPGNLSLLLQ QQQQRGVSQS 480 VPHNIVQVQS QILSESLPSV LGREQVSNHP EEQVQQQHNM IQSDQLLQRQ PANLPSSFLK 540 TDFINSGKFS GSVPPVQNML GSLCPESSAN LLNFSRSGQS MLAGQLTPRS WAPKYTHSEV 600 NAFGSSTSLP QVFPGKDAVI EPDIGNSGAQ NSALFGNNNS YGLLLPTMMP AIATSSCEAD 660 VPSIPLGDSS FQNPLYGCMQ DSSELQSRGQ VDPPTPTPTF VKVYKSGSVG RSLDISRFSS 720 YHELREELAQ MFGIEGKLED PLRSGWQLVF VDRENDILLL GDDPWEAFVN NVWYIKILSP 780 EDVQKMGEQR AEPFSPTTPG QRMNSTGTDT GTAEQEEEEE EEDKYYIFKN GTYSVGRKGC 840 DIIIHKDKGV SRIHAHIMVD EMTQSCQVRI RDLSKYGTFI NKNLSSNKKV HHFPNKQTFL 900 EDGDLLSFGT GNATFRFSYV PLVLYICCAE ASQMNHHLQD KVSSIGARLT HVYSEDCTHV 960 IVDQHVPLKR DMLDAIVAKK PLLRTSWLEL VAERSIQTKF PDCCSHVPTI MVDGVFVEVS 1020 DPKTRENCLG GYTFLLESTQ VYKFGDRLQS LLEVSGSRVN YVEEICSSSQ AFGCGENTCL 1080 TYVIPGRSVD KFDHLDNLGL SYRVDEMALI RALLSGKLDQ SILISSSVPV SSSCSTDETV 1140 VADSDEEIEM ATSVNVNATT CKEGAQNYVS RDGISMEAPS CVSKAEVPTC QDAIRLKDDR 1200 VTSKDDNCCL TARRDKADQV TSKDDNCCLT ARRDKADESE YGSSNIVYSQ VLIVRDVNIT 1260 SKNRFKEDNG VINYKRFRKA SIQSGNSFNN LVPFSKHPYK DYEFGSGDLA ESVKEEKKRK 1320 KMNAIADDMF NSEKGGRQRG LSGSLRRGLL HTRG |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4ldu_A | 1e-153 | 21 | 359 | 51 | 388 | Auxin response factor 5 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 1316 | 1320 | KKRKK |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Ghi.2038 | 0.0 | boll| ovule| stem |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | DEVELOPMENTAL STAGE: Expressed in sepals at stages 11, 12 and 13 of flower development. Highly expressed in petals at stages 9-10, decreases at stage 11 and disappears after flower stage 12. In anthers, expressed at stage 11 in the tapetum, disappears early in stage 12 when the tapetum degrades and reappears throughout the anther late in stage 12 to persist at least until stage 13. In stamen filaments, expressed at stages 12 to 13, especially near the apical end of the filament. Expressed throughout the gynoecium at early stages up to stage 12, especially strongly in ovules. Expression in gynoecium decreases late in stage 12, but persists through stage 13, especially near the apical end including the style. Expressed in the mesocarp of the fruit and the carpel septum during fruit growth. {ECO:0000269|PubMed:16107481, ECO:0000269|PubMed:16829592}. | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in the whole plant. {ECO:0000269|PubMed:10476078}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Auxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). Seems to act as transcriptional activator. Formation of heterodimers with Aux/IAA proteins may alter their ability to modulate early auxin response genes expression. Regulates both stamen and gynoecium maturation. Promotes jasmonic acid production. Partially redundant with ARF6. Involved in fruit initiation. Acts as an inhibitor to stop further carpel development in the absence of fertilization and the generation of signals required to initiate fruit and seed development. {ECO:0000269|PubMed:12036261, ECO:0000269|PubMed:16107481, ECO:0000269|PubMed:16829592}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Repressed by miR167. {ECO:0000269|PubMed:17021043}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012436680.1 | 0.0 | PREDICTED: auxin response factor 8-like isoform X1 | ||||
Swissprot | Q9FGV1 | 0.0 | ARFH_ARATH; Auxin response factor 8 | ||||
TrEMBL | A0A0D2SVH7 | 0.0 | A0A0D2SVH7_GOSRA; Auxin response factor | ||||
STRING | Gorai.008G054600.1 | 0.0 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM1344 | 28 | 94 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G37020.1 | 0.0 | auxin response factor 8 |