PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_D12G0217
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family ERF
Protein Properties Length: 524aa    MW: 58999.2 Da    PI: 7.516
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_D12G0217genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP263.35.2e-20369418255
          AP2   2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                   y+GVr+++ +g+W+AeIrdp+    r +r++lg+f taeeAa+a+++a+  ++g
  Gh_D12G0217 369 NYRGVRQRP-WGKWAAEIRDPR----RaTRVWLGTFNTAEEAARAYDKAAIDFRG 418
                  59*******.**********82....48**********************98887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM007246.0E-2865251IPR006634TRAM/LAG1/CLN8 homology domain
PROSITE profilePS509228.46665249IPR006634TRAM/LAG1/CLN8 homology domain
PfamPF037984.2E-2966210IPR006634TRAM/LAG1/CLN8 homology domain
CDDcd000181.60E-33368426No hitNo description
SMARTSM003806.9E-40369432IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.0E-32369426IPR001471AP2/ERF domain
PROSITE profilePS5103225.146369426IPR001471AP2/ERF domain
PfamPF008475.5E-14369418IPR001471AP2/ERF domain
SuperFamilySSF541712.29E-22369427IPR016177DNA-binding domain
PRINTSPR003677.5E-12370381IPR001471AP2/ERF domain
PRINTSPR003677.5E-12392408IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0016021Cellular Componentintegral component of membrane
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 524 aa     Download sequence    Send to blast
MESYIWSSNA RPDALHFLVA LYFALSFPVA RFLLDKFIFR RLSVWLLSNG SAPLRMNEAT  60
QVKITKCSES MWKLTYFATV ETWVLKITYY EPWFGDSKGY FKDWPNQELK LSLSLFYMCQ  120
CGFYIYSIFA LLTWETRRKD FSVMMSHHII TSILIGYSYV TSFFRIGSII LALHDASDVF  180
LEAAKVFKYS EREHGASACF GLFAISWLVL HMWNSITPLL HRSLVCDYLA LIAEGWVNEV  240
RHIFGEGNRC ADHLTNLAQN STLEISVMVS TLKNVITGST PSSSSADLRF DFGAPGGSAS  300
TFTGGFNADR GNMVFQVSEV LDKCHVCKFD GCLGCNLFPP SQQEEKKGTT SATTITSAIK  360
TKTKRVKKNY RGVRQRPWGK WAAEIRDPRR ATRVWLGTFN TAEEAARAYD KAAIDFRGPR  420
AKLNFPFPDS NSKADVIPPP PAAATAVGFD HEISSRSVQK EKERNDVISM EMDTEKGLGS  480
TEFWDAIGED EIQQWMMTMS EFGGDSYSSD SATTTVTTGN VHTF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A9e-23368427464ATERF1
3gcc_A9e-23368427464ATERF1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ghi.96940.0boll| ovule| root| stem
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKC7139090.0KC713909.1 Gossypium hirsutum ethylene-responsive transcription factor 10 (ERF10) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016744195.10.0PREDICTED: ethylene-responsive transcription factor ERF109-like
TrEMBLA0A1U8NZ850.0A0A1U8NZ85_GOSHI; ethylene-responsive transcription factor ERF109-like
STRINGGorai.008G025100.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM10281650
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G34410.18e-29redox responsive transcription factor 1