PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Gh_D12G0086 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | C3H | ||||||||
Protein Properties | Length: 475aa MW: 51107.5 Da PI: 8.8351 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 35.1 | 2.3e-11 | 49 | 75 | 1 | 27 |
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 ++ + C +++rtG C yG+rC+++H++ Gh_D12G0086 49 PGVPDCVYYMRTGLCGYGSRCRYNHPR 75 57899********************96 PP | |||||||
2 | zf-CCCH | 40.1 | 5.9e-13 | 94 | 120 | 1 | 27 |
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 ++++ C+f+++tGtCk+G++CkF+H++ Gh_D12G0086 94 PGEPACQFYLKTGTCKFGASCKFHHPK 120 57899********************96 PP | |||||||
3 | zf-CCCH | 38.4 | 2.1e-12 | 140 | 166 | 1 | 27 |
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 +++e+C++++++G+Ck+G +CkF+H++ Gh_D12G0086 140 PGEEECSYYLKMGQCKFGVTCKFHHPQ 166 589**********************97 PP | |||||||
4 | zf-CCCH | 36 | 1.1e-11 | 297 | 323 | 1 | 27 |
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 +++++C++++rtG Ck+G++C+++H++ Gh_D12G0086 297 PGEPECQYYLRTGDCKFGSTCRYHHPR 323 5799*********************96 PP | |||||||
5 | zf-CCCH | 36.5 | 7.9e-12 | 344 | 368 | 2 | 26 |
-S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHg 26 + +C+f++++G+Ck+G++CkF H+ Gh_D12G0086 344 GVQPCSFYLQNGHCKFGSTCKFDHP 368 6789********************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00356 | 1.1E-6 | 48 | 75 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 13.995 | 48 | 76 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 2.6E-8 | 50 | 75 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 3.92E-6 | 53 | 76 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 1.7E-4 | 54 | 75 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 3.4E-7 | 93 | 120 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 16.014 | 93 | 121 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 2.0E-10 | 95 | 120 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 7.85E-6 | 97 | 120 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 3.0E-4 | 99 | 120 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 1.3E-5 | 139 | 166 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 14.756 | 139 | 167 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 8.6E-10 | 141 | 166 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 1.57E-5 | 142 | 167 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 1.7E-5 | 296 | 323 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 15.46 | 296 | 324 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 5.0E-9 | 298 | 323 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 7.72E-6 | 300 | 325 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 1.5E-4 | 302 | 323 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 1.6E-6 | 342 | 369 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 15.319 | 342 | 370 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 2.5E-9 | 344 | 368 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 2.49E-6 | 344 | 373 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 1.9E-5 | 346 | 368 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 475 aa Download sequence Send to blast |
MELYGRNPGR NGSQSVHQPE WSPAGPGTGL EESMWQLSLR GPESYPERPG VPDCVYYMRT 60 GLCGYGSRCR YNHPRNRAAV EAAVRATGEY PERPGEPACQ FYLKTGTCKF GASCKFHHPK 120 HGGGSFSHVP LNIYGYPLRP GEEECSYYLK MGQCKFGVTC KFHHPQPAGT SMPVSAPQFY 180 QPVQSPSVPM PEQYGGASTS VRVARPPLLP GSYVQGAYGP VLFSPGVVPI PGWSHYSAPV 240 SPVLSPGAQP AVGATSLYGL TQLSSSTPSL AGPYPSLPSS TGPSSSNQKD QTFPERPGEP 300 ECQYYLRTGD CKFGSTCRYH HPRDRVVPRT NCILSPMGLP LRPGVQPCSF YLQNGHCKFG 360 STCKFDHPVG PMRYNPSASS FIDMPVAPYQ VGSLLATLAP SSSSSDLRPE LISSKKDSYL 420 SRIPSSASTS SSSVGLIFSQ TGSVPLSDLQ LSSQSSVPLS SSRSTRQGGE VRRTN |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Ghi.1943 | 0.0 | boll| leaf| ovule |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016725095.1 | 0.0 | PREDICTED: zinc finger CCCH domain-containing protein 32-like | ||||
Swissprot | Q84W91 | 0.0 | C3H32_ARATH; Zinc finger CCCH domain-containing protein 32 | ||||
TrEMBL | A0A1U8ME88 | 0.0 | A0A1U8ME88_GOSHI; zinc finger CCCH domain-containing protein 32-like | ||||
STRING | Gorai.008G009500.1 | 0.0 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM5912 | 26 | 47 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G47850.3 | 0.0 | C3H family protein |