PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gh_D12G0018

Organism

Gossypium hirsutum

Taxonomic ID

3635

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

C2H2

Protein Properties

Length: 439aa MW: 48355.4 Da PI: 8.654

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gh_D12G0018	genome	NAU-NBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	17.4	1.2e-05	79	101	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++C+k F r nL+ H r H Gh_D12G0018 79 FVCEICNKGFQRDQNLQLHRRGH 101 89*******************88 PP
2	zf-C2H2	13.5	0.00021	155	177	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 +kC++C+k + +s+ k H +t+ Gh_D12G0018 155 WKCEKCSKIYAVQSDWKAHTKTC 177 58*******************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:3.30.160.60	1.4E-5	78	101	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamily	SSF57667	2.44E-6	78	101	No hit	No description
PROSITE profile	PS50157	10.949	79	101	IPR007087	Zinc finger, C2H2
Pfam	PF12171	6.8E-5	79	101	IPR022755	Zinc finger, double-stranded RNA binding
SMART	SM00355	0.017	79	101	IPR015880	Zinc finger, C2H2-like
PROSITE pattern	PS00028	0	81	101	IPR007087	Zinc finger, C2H2
SMART	SM00355	260	120	150	IPR015880	Zinc finger, C2H2-like
Gene3D	G3DSA:3.30.160.60	2.4E-4	143	176	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamily	SSF57667	2.44E-6	150	175	No hit	No description
SMART	SM00355	160	155	175	IPR015880	Zinc finger, C2H2-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003676	Molecular Function	nucleic acid binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 439 aa Download sequence Send to blast
MFPTAMSNST SLSEEASTTV SSCTRVVQDF CALIPIVSTI SPQQQPQNIK KKRSLPGNPD 60 PDAEVIALSP RTLLATNRFV CEICNKGFQR DQNLQLHRRG HNLPWKLKQR NNKEIKKRAY 120 VCPEPTCVHH HPSRALGDLT GIKKHYCRKH GEKKWKCEKC SKIYAVQSDW KAHTKTCGTR 180 EYRCDCGTLF SRKDSFITHR AFCDALAEES ARLSANQLAV AAATNPALHH LTSQANPTTN 240 PSSLFPFETH ISLNPWVDPT PTSNPNPNNP LHVKPESHHL APFFQEALPP QKTLITSPFQ 300 SLHVSNNAPS IAAAATSTSP HLSATALLQK AATVGATATQ INNNNNGMDF FGFASGNLAT 360 WQKSSDRFTR DFLGLTGDYH QHHGGGGGNG NVSVSMNMKD VLTYAGEVEL QQHFERDHSL 420 LKPQGFGFAE PASETWADC

Sequence ? help Back to Top

Protein Sequence Length: 439 aa Download sequence Send to blast

MFPTAMSNST SLSEEASTTV SSCTRVVQDF CALIPIVSTI SPQQQPQNIK KKRSLPGNPD  60
PDAEVIALSP RTLLATNRFV CEICNKGFQR DQNLQLHRRG HNLPWKLKQR NNKEIKKRAY  120
VCPEPTCVHH HPSRALGDLT GIKKHYCRKH GEKKWKCEKC SKIYAVQSDW KAHTKTCGTR  180
EYRCDCGTLF SRKDSFITHR AFCDALAEES ARLSANQLAV AAATNPALHH LTSQANPTTN  240
PSSLFPFETH ISLNPWVDPT PTSNPNPNNP LHVKPESHHL APFFQEALPP QKTLITSPFQ  300
SLHVSNNAPS IAAAATSTSP HLSATALLQK AATVGATATQ INNNNNGMDF FGFASGNLAT  360
WQKSSDRFTR DFLGLTGDYH QHHGGGGGNG NVSVSMNMKD VLTYAGEVEL QQHFERDHSL  420
LKPQGFGFAE PASETWADC

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5b3h_C	2e-36	151	215	3	67	Zinc finger protein JACKDAW
5b3h_F	2e-36	151	215	3	67	Zinc finger protein JACKDAW
Search in ModeBase

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Ghi.9393	1e-117	boll\| ovule

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor. {ECO:0000305}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012435815.1	0.0	PREDICTED: protein indeterminate-domain 12-like
Swissprot	O22759	1e-125	IDD12_ARATH; Protein indeterminate-domain 12
TrEMBL	A0A0D2SS97	0.0	A0A0D2SS97_GOSRA; Uncharacterized protein
STRING	Gorai.008G002200.1	0.0	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM155	28	306

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G02670.1	1e-119	indeterminate(ID)-domain 12

Publications ? help Back to Top
Moreno-Risueno MA, et al. Transcriptional control of tissue formation throughout root development. Science, 2015. 350(6259): p. 426-30 [PMID:26494755]