PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gh_D11G3534

Organism

Gossypium hirsutum

Taxonomic ID

3635

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

MYB_related

Protein Properties

Length: 332aa MW: 36408.7 Da PI: 7.1525

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gh_D11G3534	genome	NAU-NBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	45.4	1.8e-14	103	147	3	47
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +WT+eE++l++ + ++ G+g+W+ I+r + k+Rt+ q+ s+ qky Gh_D11G3534 103 PWTEEEHKLFLVGLQKVGKGDWRGISRNFVKTRTPTQVASHAQKY 147 8*******************************************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	18.1	96	152	IPR017930	Myb domain
SuperFamily	SSF46689	3.96E-17	98	153	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	1.2E-16	99	150	IPR006447	Myb domain, plants
SMART	SM00717	2.4E-10	100	150	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	3.7E-11	102	147	IPR009057	Homeodomain-like
Pfam	PF00249	1.2E-11	103	147	IPR001005	SANT/Myb domain
CDD	cd00167	2.47E-9	103	148	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 332 aa Download sequence Send to blast
MPPATCASAS SSSIVNSSPI GGGGGGGGGG EIMLFGVRVV VDSMRKSVSM NNLSQYEQPH 60 ESNKNNNKND KDQGDDNLTA GYASADDTVP HSTGNRERKR GVPWTEEEHK LFLVGLQKVG 120 KGDWRGISRN FVKTRTPTQV ASHAQKYFLR RSNLNRRRRR SSLFDITTDT VQAIPMEEER 180 VDRQENSTQP SETNVFPIMP ATFPMAFNQV VPPVPIQNPT ENLTIAQGNQ LNNNVPTANL 240 IRPVPNFPAL QRSDLNTDLN PATDPLSLSL KLSLQSDQMD SSSSSTSRHS PFQWIELKTE 300 MGGCPVLSCS VVICHVTHVT LDCPDDMQGR CF

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Ghi.1098	0.0	boll\| ovule\| root\| stem

Functional Description ? help Back to Top
Source	Description
UniProt	Binds selectively to the DNA sequence 5'-[GA]GATAA-3' and may act as a transcription factor involved in the regulation of drought-responsive genes. Enhances stomatal closure in response to abscisic acid (ABA). Confers drought and salt tolerance. {ECO:0000269\|PubMed:21030505}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated by drought, high salinity, and ABA. {ECO:0000269\|PubMed:21030505}.

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	HQ525016	1e-51	HQ525016.1 Gossypium herbaceum clone NBRI_E_415 simple sequence repeat marker, mRNA sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_017620108.1	1e-163	PREDICTED: transcription factor MYB1R1-like
Swissprot	Q2V9B0	8e-71	MY1R1_SOLTU; Transcription factor MYB1R1
TrEMBL	A0A0D2T8A1	0.0	A0A0D2T8A1_GOSRA; Uncharacterized protein
STRING	Gorai.007G034000.1	0.0	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM2461	26	69

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G74840.2	1e-59	MYB_related family protein

Publications ? help Back to Top
Shin D, et al. Expression of StMYB1R-1, a novel potato single MYB-like domain transcription factor, increases drought tolerance. Plant Physiol., 2011. 155(1): p. 421-32 [PMID:21030505]