PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Gh_D11G3363 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | MYB_related | ||||||||
Protein Properties | Length: 114aa MW: 12845.7 Da PI: 10.309 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 32.1 | 2.6e-10 | 45 | 80 | 3 | 40 |
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqc 40 W++ E e++++a +++G++ Wk++a+ + +R+++++ Gh_D11G3363 45 QWSKAEIEQFYKAYREHGKD-WKKVAAAVH-NRSAEMV 80 6*****************99.*********.***9986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 4.49E-11 | 41 | 89 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 1.3E-4 | 42 | 90 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 4.3E-7 | 44 | 81 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 2.5E-9 | 45 | 80 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 3.40E-7 | 46 | 80 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 114 aa Download sequence Send to blast |
MAPTRKSKSV NKQYSSVYEV SPDKNAGNSR KSKAKKKLTD KLGTQWSKAE IEQFYKAYRE 60 HGKDWKKVAA AVHNRSAEMV EALYSMNRAY LSLPDGTASV IGLIAMMTDH YNVL |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed ubiquitously in vegetative and reproductive tissues. {ECO:0000269|PubMed:15246533}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016718189.1 | 2e-72 | PREDICTED: protein ALWAYS EARLY 2-like isoform X1 | ||||
Refseq | XP_016718193.1 | 2e-72 | PREDICTED: protein ALWAYS EARLY 2-like isoform X4 | ||||
Swissprot | Q6A331 | 5e-44 | ALY1_ARATH; Protein ALWAYS EARLY 1 | ||||
TrEMBL | A0A1U8LXQ8 | 3e-71 | A0A1U8LXQ8_GOSHI; protein ALWAYS EARLY 2-like isoform X4 | ||||
TrEMBL | A0A1U8LY50 | 3e-71 | A0A1U8LY50_GOSHI; protein ALWAYS EARLY 2-like isoform X1 | ||||
STRING | Gorai.007G342200.1 | 7e-72 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM21251 | 5 | 5 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G21430.2 | 1e-34 | DNA binding |
Publications ? help Back to Top | |||
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