PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Gh_D11G3340 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | bHLH | ||||||||
Protein Properties | Length: 233aa MW: 26265.9 Da PI: 7.9961 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 38.5 | 2.1e-12 | 64 | 110 | 3 | 54 |
HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 ++h+e+E+rRR+riNs +++Lr llP + K +Ka+ L k+v+ +k+L Gh_D11G3340 64 KNHKEAEKRRRERINSHLNRLRALLPCN-----SKTDKASLLAKVVQRVKEL 110 58*************************8.....7************999988 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 15.459 | 61 | 110 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 1.03E-11 | 64 | 113 | No hit | No description |
Pfam | PF00010 | 5.8E-10 | 64 | 110 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 3.6E-13 | 65 | 127 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 2.75E-13 | 65 | 118 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 1.5E-10 | 67 | 116 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:3.30.70.260 | 5.9E-6 | 148 | 211 | No hit | No description |
SuperFamily | SSF55021 | 5.49E-5 | 148 | 217 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 233 aa Download sequence Send to blast |
MQPENFELYR FLAENGVGSY GGFPSGSEFP AMQSFSSSST YYPLEMSGVT TETTPHDKAL 60 AALKNHKEAE KRRRERINSH LNRLRALLPC NSKTDKASLL AKVVQRVKEL KEQALETTEL 120 DNLPSETDEI TVLSCDYSGD GRLIFKASLC CEDRSDLLPE LIDILKSLHL KTLKAEMATL 180 GGRIRNVFIV SADKDHSIES VHFLQNALKS LLERSNPSDR SKRRRVLDHK IIM |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 221 | 225 | KRRRV |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Ghi.12149 | 0.0 | root| stem |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | JX584134 | 1e-128 | JX584134.1 Gossypium hirsutum clone NBRI_GE17351 microsatellite sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012434877.1 | 1e-171 | PREDICTED: transcription factor bHLH106 | ||||
Refseq | XP_016711917.1 | 1e-171 | PREDICTED: transcription factor bHLH106 | ||||
Refseq | XP_017629747.1 | 1e-171 | PREDICTED: transcription factor bHLH106 | ||||
Swissprot | O80674 | 7e-89 | BH106_ARATH; Transcription factor bHLH106 | ||||
TrEMBL | A0A0D2R4I3 | 1e-170 | A0A0D2R4I3_GOSRA; Uncharacterized protein | ||||
TrEMBL | A0A1U8LBD8 | 1e-170 | A0A1U8LBD8_GOSHI; transcription factor bHLH106 | ||||
TrEMBL | A0A2P5Y4X9 | 1e-170 | A0A2P5Y4X9_GOSBA; Uncharacterized protein | ||||
STRING | Gorai.007G352300.1 | 1e-171 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM3642 | 27 | 62 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G41130.1 | 3e-91 | bHLH family protein |
Publications ? help Back to Top | |||
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