PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_D11G3303
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family GRAS
Protein Properties Length: 634aa    MW: 72630.4 Da    PI: 6.5226
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_D11G3303genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS3802.9e-1162606321374
         GRAS   1 lvelLlecAeavssgdle.laqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshlt 97 
                  l++lL++cA+av++gd +   ++lL+++++++sp gd +qRla+y++eAL+arla+++s++yk+l + +ts     + ++a+ l++ ++P+ k+sh++
  Gh_D11G3303 260 LRTLLITCAQAVAAGDRNgTSSELLKQIRQHSSPFGDGNQRLAHYLAEALEARLAGTGSHIYKSLVSYRTS---AYDIMKAYLLYVAACPFRKVSHFI 354
                  6789************9967789******************************************999998...8999******************** PP

         GRAS  98 aNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrledlelee 193
                  +N+ I  a  ++ r+H+iDf+i +G+QWp+L++ L+ Rpegpp+lRiTg++ p++g   +e++eetg+rLa +Aee++vpf++++ +ak++e+++lee
  Gh_D11G3303 355 CNKSINVASRKSMRLHVIDFGILYGFQWPTLIERLSLRPEGPPKLRITGIDFPQPGfkPAERVEETGRRLAAYAEEFKVPFQYKA-IAKKWETVRLEE 451
                  *******************************************************999***************************.7*********** PP

         GRAS 194 LrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellg 291
                  L+++++E ++Vn+ ++ ++llde+v+++s+r+ vL+l+++++P+++++   +   n++ F++rf eal ++s++fd+l+a +pre+ er+ +Ere+lg
  Gh_D11G3303 452 LEIEEDEFVVVNCLYRAKNLLDETVAVHSPRNIVLNLIRKINPNLFIHGIINGAFNAPFFVTRFREALFHFSSMFDMLDAIVPREDWERMLIEREILG 549
                  ************************************************************************************************** PP

         GRAS 292 reivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
                  re+ n++ace  er+er et+++W++r+ +aGF + p++ +++k+a   +++++ + + ++e++ +lv+gWk+r ++++SaW+
  Gh_D11G3303 550 REALNAIACESWERVERPETVKQWHARILRAGFLQQPFQREIVKEAFERVQTFYHKDFVIDEDKLWLVQGWKGRIIYALSAWK 632
                  ******************************************************888*************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098564.2234612IPR005202Transcription factor GRAS
PfamPF035141.0E-113260632IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 634 aa     Download sequence    Send to blast
MDPRFEGFSV FQKENFKEFH YHPSEPPASS LRHEEDLSED CDFSDSILRY INDILMEEDM  60
EDKSCMLQES LDLQAAEKSF YDVLGKKYPP SPEHNSRSFG DNNGDLLQNQ TQSPNVSSIS  120
QSSYNSSSMV SLDGMLESPN STLQVPESIW QFNKGVEEAS KFIPSNVDLF GNFESYSKGR  180
KFSNRDDVAD EDERTSKQVA VCSETSVRSE MLDMVLLCSS GKPPTRFTAL RDSLRDGIGR  240
KVQQKGRGKK QSGKKEVVDL RTLLITCAQA VAAGDRNGTS SELLKQIRQH SSPFGDGNQR  300
LAHYLAEALE ARLAGTGSHI YKSLVSYRTS AYDIMKAYLL YVAACPFRKV SHFICNKSIN  360
VASRKSMRLH VIDFGILYGF QWPTLIERLS LRPEGPPKLR ITGIDFPQPG FKPAERVEET  420
GRRLAAYAEE FKVPFQYKAI AKKWETVRLE ELEIEEDEFV VVNCLYRAKN LLDETVAVHS  480
PRNIVLNLIR KINPNLFIHG IINGAFNAPF FVTRFREALF HFSSMFDMLD AIVPREDWER  540
MLIEREILGR EALNAIACES WERVERPETV KQWHARILRA GFLQQPFQRE IVKEAFERVQ  600
TFYHKDFVID EDKLWLVQGW KGRIIYALSA WKPA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A5e-452496338380Protein SCARECROW
5b3h_A4e-452496337379Protein SCARECROW
5b3h_D4e-452496337379Protein SCARECROW
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in cotyledons, leaves and flowers, and in the elongation zone in root. {ECO:0000269|PubMed:18500650}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJX5778781e-178JX577878.1 Gossypium hirsutum clone NBRI_GE9783 microsatellite sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016679877.10.0PREDICTED: scarecrow-like protein 9
SwissprotO809330.0SCL9_ARATH; Scarecrow-like protein 9
TrEMBLA0A1U8IP260.0A0A1U8IP26_GOSHI; scarecrow-like protein 9
STRINGGorai.007G376400.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM35827189
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G37650.10.0GRAS family protein