PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gh_D11G3286

Organism

Gossypium hirsutum

Taxonomic ID

3635

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

NF-YB

Protein Properties

Length: 746aa MW: 80384.2 Da PI: 10.3795

Description

NF-YB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gh_D11G3286	genome	NAU-NBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NF-YB	175.5	5.2e-55	26	119	1	94
NF-YB 1 vreqdrflPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvylkkyrele 94 vreqdrflPian+srimkk+lPan+ki+kdaketvqecvsefisf+tseasdkcqrekrktingddllwa+atlGfedy++pl++yl++yre + Gh_D11G3286 26 VREQDRFLPIANISRIMKKALPANGKIAKDAKETVQECVSEFISFITSEASDKCQREKRKTINGDDLLWAMATLGFEDYIDPLRIYLSRYREGD 119 59*****************************************************************************************965 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.20.10	1.9E-52	21	133	IPR009072	Histone-fold
SuperFamily	SSF47113	3.26E-38	29	128	IPR009072	Histone-fold
Pfam	PF00808	2.2E-27	32	96	IPR003958	Transcription factor CBF/NF-Y/archaeal histone domain
PRINTS	PR00615	1.8E-18	60	78	No hit	No description
PROSITE pattern	PS00685	0	63	79	IPR003956	Transcription factor, NFYB/HAP3, conserved site
PRINTS	PR00615	1.8E-18	79	97	No hit	No description
PRINTS	PR00615	1.8E-18	98	116	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0043565	Molecular Function	sequence-specific DNA binding
GO:0046982	Molecular Function	protein heterodimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 746 aa Download sequence Send to blast
MAEALAPASP GGGSHESGEQ SPKSNVREQD RFLPIANISR IMKKALPANG KIAKDAKETV 60 QECVSEFISF ITSEASDKCQ REKRKTINGD DLLWAMATLG FEDYIDPLRI YLSRYREGDA 120 KGSAKGGDAS AKKDVQPGPN GQLVHQGSFS QGVSYGNSQG QVQFPGIHLI WRTDIMDGLS 180 LIDVTSEDDC LIDSPLRDDT TPQFSGSFDE HGKLEGDETR GKGRYNLRKS LTWDSAFFSS 240 AAFLEPEECT NTLESSENGE IHTLPGIQED VDNYSDSSTM LHGEASTLRN SFVKKELETK 300 DPKNVSSSKK LEYTNHDKVK QKAARKKASL AVTVPVKTMK QAPARPQTSQ SSRSEISTTS 360 SLHKPPKGLS IVGPISATHT RRASLGGLNC KIEKDTKSVT GKGTTVLKTP RRPASSTGAT 420 KIAAEGKSRV GRSQVSTFLK SPTNLNQSMS VASSYGEWSS DTSLSQSTSN KRSSIVRAGL 480 GSGSHKVTVR NSDPEQVLDA STGSEVTGSL DESTGVHSAS IKPSGLRPPS PKLGYSNGVR 540 LPRHTRTRSM DSYPSMSLIL PQIGPKSNTP SAYSNKMPTR TTTTTKERLP GHTRTQSMDS 600 YPIMPKIGPR SNSPSAYSNK IPARTTTTKE RLPGHTRTRS MDSYPIMPKI GQRSNSPSAY 660 SNTIPARTTT TKVLNASRNP KIKTGIIYPK HQNKSSPKPR KGSYSKAQGI GSAEKIASPD 720 VPKLVVKLGG KGAQIKDTKI VPLGGT

Sequence ? help Back to Top

Protein Sequence Length: 746 aa Download sequence Send to blast

MAEALAPASP GGGSHESGEQ SPKSNVREQD RFLPIANISR IMKKALPANG KIAKDAKETV  60
QECVSEFISF ITSEASDKCQ REKRKTINGD DLLWAMATLG FEDYIDPLRI YLSRYREGDA  120
KGSAKGGDAS AKKDVQPGPN GQLVHQGSFS QGVSYGNSQG QVQFPGIHLI WRTDIMDGLS  180
LIDVTSEDDC LIDSPLRDDT TPQFSGSFDE HGKLEGDETR GKGRYNLRKS LTWDSAFFSS  240
AAFLEPEECT NTLESSENGE IHTLPGIQED VDNYSDSSTM LHGEASTLRN SFVKKELETK  300
DPKNVSSSKK LEYTNHDKVK QKAARKKASL AVTVPVKTMK QAPARPQTSQ SSRSEISTTS  360
SLHKPPKGLS IVGPISATHT RRASLGGLNC KIEKDTKSVT GKGTTVLKTP RRPASSTGAT  420
KIAAEGKSRV GRSQVSTFLK SPTNLNQSMS VASSYGEWSS DTSLSQSTSN KRSSIVRAGL  480
GSGSHKVTVR NSDPEQVLDA STGSEVTGSL DESTGVHSAS IKPSGLRPPS PKLGYSNGVR  540
LPRHTRTRSM DSYPSMSLIL PQIGPKSNTP SAYSNKMPTR TTTTTKERLP GHTRTQSMDS  600
YPIMPKIGPR SNSPSAYSNK IPARTTTTKE RLPGHTRTRS MDSYPIMPKI GQRSNSPSAY  660
SNTIPARTTT TKVLNASRNP KIKTGIIYPK HQNKSSPKPR KGSYSKAQGI GSAEKIASPD  720
VPKLVVKLGG KGAQIKDTKI VPLGGT

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
4g91_B	1e-41	26	117	1	92	Transcription factor HapC (Eurofung)
4g92_B	1e-41	26	117	1	92	Transcription factor HapC (Eurofung)
Search in ModeBase

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Ghi.2007	0.0	boll\| ovule

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012435198.1	0.0	PREDICTED: uncharacterized protein LOC105761812 isoform X1
Refseq	XP_016679853.1	0.0	PREDICTED: uncharacterized protein LOC107898815 isoform X1
TrEMBL	A0A0D2R5I4	0.0	A0A0D2R5I4_GOSRA; Uncharacterized protein
TrEMBL	A0A1U8ITW3	0.0	A0A1U8ITW3_GOSHI; uncharacterized protein LOC107898815 isoform X1
STRING	Gorai.007G374500.1	0.0	(Gossypium raimondii)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G37060.3	4e-65	nuclear factor Y, subunit B8