PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gh_D11G3276

Organism

Gossypium hirsutum

Taxonomic ID

3635

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

MYB_related

Protein Properties

Length: 464aa MW: 52655.2 Da PI: 7.989

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gh_D11G3276	genome	NAU-NBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	26.7	1.3e-08	344	391	4	48
S-HHHHHHHHHHHHHTTTT-HHHHHHHHT...TTS-HHHHHHHHHHHT CS Myb_DNA-binding 4 WTteEdellvdavkqlGggtWktIartmg...kgRtlkqcksrwqkyl 48 WT E +lvd+++++G g+W+ I + + + Rt+ +++++w+++l Gh_D11G3276 344 WTLVEVIKLVDGIAKYGVGRWTNIKKLLFassTYRTPVDLRDKWRNLL 391 **********************************************96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	12.695	336	395	IPR017930	Myb domain
Gene3D	G3DSA:1.10.10.60	9.2E-12	336	395	IPR009057	Homeodomain-like
SuperFamily	SSF46689	1.12E-15	338	409	IPR009057	Homeodomain-like
SMART	SM00717	2.7E-9	340	393	IPR001005	SANT/Myb domain
CDD	cd11660	9.09E-17	342	392	No hit	No description
Pfam	PF00249	8.6E-7	343	391	IPR001005	SANT/Myb domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 464 aa Download sequence Send to blast
METDRKSHSM KKLDDVKCQR VDQPVVPGLD DEVTEVEHLL AEPKIEHVSV DGILCFGNEN 60 IEKHLKMEDF SCAFDYGWKI SSGGLDSIRG RGGDDLKLEV LDGLLDEVDE VDDIDAAHDL 120 SGACEDFLLD IEFPEKLSEL DCGPREGSTL CNSSSESHSP GFSGRSNSVS GISESLIATV 180 RESNSENGGL GKRVGCNLRH NFRRKHGCQG PVMDVGRSNI EHVQDLDESD DDEKPLKVKS 240 SVKVTKGDTL LRQKRLRKPT RRYIEEFSRN STMEESKSHK IQPQEEFPQV PSESQPRRGR 300 PKKIVLKSEL ESDYELSASE SEDGRKRTKR SKTACDRRKH QKMWTLVEVI KLVDGIAKYG 360 VGRWTNIKKL LFASSTYRTP VDLRDKWRNL LRSSSVQENN RREVENHPKH AVRPLPKPVV 420 RRIRELATIH PYPKVSSVDY VPSSEQPTTK GTPVYYRARN LRRK

Sequence ? help Back to Top

Protein Sequence Length: 464 aa Download sequence Send to blast

METDRKSHSM KKLDDVKCQR VDQPVVPGLD DEVTEVEHLL AEPKIEHVSV DGILCFGNEN  60
IEKHLKMEDF SCAFDYGWKI SSGGLDSIRG RGGDDLKLEV LDGLLDEVDE VDDIDAAHDL  120
SGACEDFLLD IEFPEKLSEL DCGPREGSTL CNSSSESHSP GFSGRSNSVS GISESLIATV  180
RESNSENGGL GKRVGCNLRH NFRRKHGCQG PVMDVGRSNI EHVQDLDESD DDEKPLKVKS  240
SVKVTKGDTL LRQKRLRKPT RRYIEEFSRN STMEESKSHK IQPQEEFPQV PSESQPRRGR  300
PKKIVLKSEL ESDYELSASE SEDGRKRTKR SKTACDRRKH QKMWTLVEVI KLVDGIAKYG  360
VGRWTNIKKL LFASSTYRTP VDLRDKWRNL LRSSSVQENN RREVENHPKH AVRPLPKPVV  420
RRIRELATIH PYPKVSSVDY VPSSEQPTTK GTPVYYRARN LRRK

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Ghi.12388	0.0	boll

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016679842.1	0.0	PREDICTED: uncharacterized protein LOC107898807
TrEMBL	A0A1U8INZ2	0.0	A0A1U8INZ2_GOSHI; uncharacterized protein LOC107898807
STRING	Gorai.007G373500.1	0.0	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM9200	19	27

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G72650.1	8e-25	TRF-like 6