PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_D11G3183
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family NF-YA
Protein Properties Length: 314aa    MW: 34182.5 Da    PI: 9.9343
Description NF-YA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_D11G3183genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CBFB_NFYA96.43.2e-30160215258
    CBFB_NFYA   2 eplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 
                   p+YVNaKQy++I++RRq+Rak+  ++kl +k+rkpy+h SRh hA+rRpRg+gGrF
  Gh_D11G3183 160 GPIYVNAKQYKGIMRRRQSRAKAVLQNKL-SKARKPYMHYSRHLHAMRRPRGCGGRF 215
                  69***************************.**************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005211.3E-34157218IPR001289Nuclear transcription factor Y subunit A
PROSITE profilePS5115236.469158218IPR001289Nuclear transcription factor Y subunit A
PRINTSPR006165.4E-21161183IPR001289Nuclear transcription factor Y subunit A
PfamPF020453.9E-26161215IPR001289Nuclear transcription factor Y subunit A
PRINTSPR006165.4E-21192215IPR001289Nuclear transcription factor Y subunit A
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 314 aa     Download sequence    Send to blast
MQTLHLKEYG GIGNHPMGQL ASVPPSSLPT LPWCSVLGSH QSLHGGEAFG AQLKPFLMEH  60
PSNGDQVLSS KQLNKGNTAQ FTIFPGDCKN SGDEHNKPQA VTSLQSDPSE NGARFELGFG  120
QHMASAKYPY MDQLYGVFST YGAQISGRVM LPLNMASEEG PIYVNAKQYK GIMRRRQSRA  180
KAVLQNKLSK ARKPYMHYSR HLHAMRRPRG CGGRFLNTRG SGSDKDDTAT KKATQGLMSN  240
RSCSSDSGTL NSSKGPTHSG SSEVTSIYSR RDLDHHFLID HLGLSVHSIS SMINNQRGGT  300
ITVATADNCC NLKV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4g91_A2e-16159216260HAPB protein
4g92_A2e-16159216260HAPB protein
Search in ModeBase
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJX5836293e-46JX583629.1 Gossypium hirsutum clone NBRI_GE16721 microsatellite sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016722502.10.0PREDICTED: nuclear transcription factor Y subunit A-10-like isoform X2
TrEMBLA0A1U8M6R00.0A0A1U8M6R0_GOSHI; nuclear transcription factor Y subunit A-10-like isoform X2
STRINGGorai.007G363800.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM30082767
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06510.21e-49nuclear factor Y, subunit A10