PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Gh_D11G3136 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
|
||||||||
Family | ERF | ||||||||
Protein Properties | Length: 283aa MW: 32100.9 Da PI: 6.7269 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 62.2 | 1.1e-19 | 28 | 78 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 ++y+GVr++ +g+WvAeIr+p++ r+r +lg+f taeeAa a++ a+++l+g Gh_D11G3136 28 CQYRGVRQRT-WGKWVAEIREPKK---RTRLWLGSFATAEEAAMAYDDAARRLYG 78 68*****999.**********965...5*************************98 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 6.00E-32 | 28 | 88 | No hit | No description |
Pfam | PF00847 | 7.3E-13 | 28 | 78 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 22.616 | 29 | 86 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 2.3E-35 | 29 | 92 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 1.6E-30 | 29 | 87 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 2.29E-21 | 29 | 87 | IPR016177 | DNA-binding domain |
PRINTS | PR00367 | 2.2E-10 | 30 | 41 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 2.2E-10 | 52 | 68 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 283 aa Download sequence Send to blast |
MDSYKRSPLK PWKKGPTRGK GGPQNASCQY RGVRQRTWGK WVAEIREPKK RTRLWLGSFA 60 TAEEAAMAYD DAARRLYGPE AYLNLPHLQR IPTTTTTNLS NKSSTQKFKW IPSNNFVSMF 120 PSSSPGLLNI NAQPSVHVIH QRLQELKNNG VLKTKTDTQS KNIADDVQMK EKDVVGVSSD 180 KPQIDLHEFL QQLGIKKDEK KQCEEEAVVN NNDDAESTLT AMDSTMKDYY DELVPFGENS 240 SFNWDAMIEM HGGVDGFHGV EASFQVHDHG YEEDLAFPTI WNF |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1gcc_A | 3e-18 | 29 | 86 | 2 | 60 | ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1 |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
---|---|---|---|---|---|---|
UniGene ID | E-value | Expressed in | ||||
Ghi.23076 | 0.0 | boll |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Transcriptional activator that binds specifically to the DNA sequence 5'-[AG]CCGAC-3'. Binding to the C-repeat/DRE element mediates high salinity-inducible transcription. {ECO:0000269|PubMed:11798174}. |
Binding Motif ? help Back to Top | |||
---|---|---|---|
Motif ID | Method | Source | Motif file |
MP00411 | DAP | Transfer from AT3G57600 | Download |
Regulation -- Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | INDUCTION: By high-salt stress. {ECO:0000269|PubMed:11798174}. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_012434958.1 | 0.0 | PREDICTED: dehydration-responsive element-binding protein 2F | ||||
Refseq | XP_016712066.1 | 0.0 | PREDICTED: dehydration-responsive element-binding protein 2F-like | ||||
Swissprot | Q9SVX5 | 2e-85 | DRE2F_ARATH; Dehydration-responsive element-binding protein 2F | ||||
TrEMBL | A0A0D2PJR3 | 0.0 | A0A0D2PJR3_GOSRA; Uncharacterized protein | ||||
TrEMBL | A0A1U8LBS9 | 0.0 | A0A1U8LBS9_GOSHI; dehydration-responsive element-binding protein 2F-like | ||||
STRING | Gorai.007G359400.1 | 0.0 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM8168 | 26 | 38 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT3G57600.1 | 3e-75 | ERF family protein |
Publications ? help Back to Top | |||
---|---|---|---|
|