PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Gh_D11G3081 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | bHLH | ||||||||
Protein Properties | Length: 256aa MW: 29032.1 Da PI: 6.7172 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 41.3 | 2.8e-13 | 69 | 121 | 1 | 55 |
CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 ++ +hn+ Er RR+++N+ ++ Lr++lP++ ++ ++ls +++ + +YI +Lq Gh_D11G3081 69 KKLNHNASERVRRRKMNDLYSSLRSMLPPS--EQTRRLSIPATVSRMLKYIPELQ 121 6789*************************6..48888***************998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47459 | 1.57E-14 | 67 | 135 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 7.17E-13 | 67 | 125 | No hit | No description |
Gene3D | G3DSA:4.10.280.10 | 1.3E-10 | 68 | 124 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS50888 | 14.259 | 68 | 120 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 2.1E-10 | 69 | 121 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 1.7E-8 | 74 | 126 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 256 aa Download sequence Send to blast |
MCALFPVCEW PLDTPIGHQH IISGPFSGFE SFDDFHHFTF PDDLPRIQLD RPMLSAGDTG 60 DENPTTVEKK LNHNASERVR RRKMNDLYSS LRSMLPPSEQ TRRLSIPATV SRMLKYIPEL 120 QSQVEILLQK KQQILSTICK QDDHDLSNQH HQNKTKLSDG FKVSPFTVSG TKVSDTEATI 180 QISTFGPTSQ GIPPLSPILR GLEEDGLFLT DASCFESFGG RVFYNLNFQV ETTYNLEAML 240 LLLNEKLLSL YKKRKA |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | JX582021 | 5e-63 | JX582021.1 Gossypium hirsutum clone NBRI_GE14786 microsatellite sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016711964.1 | 0.0 | PREDICTED: transcription factor ORG2-like | ||||
TrEMBL | A0A1U8LFM3 | 0.0 | A0A1U8LFM3_GOSHI; transcription factor ORG2-like | ||||
STRING | Gorai.007G353000.1 | 0.0 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM482 | 28 | 153 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G56970.1 | 1e-43 | bHLH family protein |