PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Gh_D11G3060 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | MYB | ||||||||
Protein Properties | Length: 332aa MW: 37427.1 Da PI: 7.0113 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 59.2 | 9.2e-19 | 16 | 63 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT+eEd +l+d+++++G g+W++ ++ g++R++k+c++rw +yl Gh_D11G3060 16 KGPWTPEEDRILIDYIQKHGHGSWRALPNLAGLNRCGKSCRLRWTNYL 63 79********************************************97 PP | |||||||
2 | Myb_DNA-binding | 54.9 | 2e-17 | 69 | 114 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg+++ eE++ ++++++ lG++ W++Ia +++ gRt++++k++w++++ Gh_D11G3060 69 RGKFSDEEEQTIINLHAVLGNK-WSAIATHLP-GRTDNEIKNFWNTHM 114 89********************.*********.************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 18.382 | 11 | 63 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 1.58E-31 | 13 | 110 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 1.3E-15 | 15 | 65 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 2.0E-17 | 16 | 63 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 7.1E-25 | 17 | 70 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 2.24E-12 | 18 | 63 | No hit | No description |
PROSITE profile | PS51294 | 27.092 | 64 | 118 | IPR017930 | Myb domain |
SMART | SM00717 | 4.0E-16 | 68 | 116 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 5.4E-16 | 69 | 113 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 6.00E-12 | 71 | 114 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 2.3E-27 | 71 | 118 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 332 aa Download sequence Send to blast |
MMVRPPSGND ENGVKKGPWT PEEDRILIDY IQKHGHGSWR ALPNLAGLNR CGKSCRLRWT 60 NYLRPDIKRG KFSDEEEQTI INLHAVLGNK WSAIATHLPG RTDNEIKNFW NTHMRRKLLQ 120 MGIDPVTHRP RTDHLNVIAS LPQLLAAANF NNMNNLLDVN ALNRLQLDAA TLAKLHLLHN 180 MLQILGTPAI NAMDFLSGPT FRENHQLYHL QPNTGEYQPS NLIEASQNTH PLKDLKFSSY 240 INNDRFASSL FVANNNIPSS SIPQLPALIP ASPEHRPAVV ENNKINNPNE ISNPSSTSTT 300 FEAWGDLMDD EASDSYWRDI IDQASSQSWP IS |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1h8a_C | 3e-28 | 16 | 118 | 27 | 128 | MYB TRANSFORMING PROTEIN |
Search in ModeBase |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | DEVELOPMENTAL STAGE: Specifically and transiently expressed in root endodermal cells overlying the early stages of lateral root primordia formation. {ECO:0000269|PubMed:24902892, ECO:0000269|PubMed:25482809}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor that acts as negative regulator of lateral root (LR) development. Required for normal auxin responses during LR development. May be part of a negative feedback loop stimulated specifically in the endodermis upon LR initiation to ensure that LRs are formed only in the correct place. {ECO:0000269|PubMed:24902892}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced by abscisic acid (ABA), auxin and gravity in roots. {ECO:0000269|PubMed:24902892}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012434825.1 | 0.0 | PREDICTED: transcription factor MYB39-like isoform X1 | ||||
Refseq | XP_016686209.1 | 0.0 | PREDICTED: transcription factor MYB39-like | ||||
Swissprot | Q9S9Z2 | 1e-85 | MYB93_ARATH; Transcription factor MYB93 | ||||
TrEMBL | A0A0D2TRP4 | 0.0 | A0A0D2TRP4_GOSRA; Uncharacterized protein | ||||
TrEMBL | A0A1U8JD89 | 0.0 | A0A1U8JD89_GOSHI; transcription factor MYB39-like | ||||
STRING | Gorai.007G348600.1 | 0.0 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM4 | 28 | 2646 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G16770.2 | 1e-103 | myb domain protein 9 |
Publications ? help Back to Top | |||
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