PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_D11G2978
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family STAT
Protein Properties Length: 1037aa    MW: 116155 Da    PI: 5.5162
Description STAT family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_D11G2978genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1STAT178.41e-552223431122
         STAT   1 ldvvllnalgqpvekdvevvasLlyadsglvveksddaeapLLisydGvefssedrplkllrGrasfklkisqLsskcdnrLfrikfeipklkkypfl 98 
                  ldv+lln++gqpv+k++evvasLlya + l+vek++d+e+pLL+s+dG+ef+s drp+kl +Grasfklkis+Lsskcdnr f+ikf + kl+ y+fl
  Gh_D11G2978 222 LDVLLLNTFGQPVNKELEVVASLLYAHNWLPVEKTNDEEPPLLASCDGIEFASCDRPCKLSKGRASFKLKISKLSSKCDNRQFCIKFGVSKLEGYRFL 319
                  89************************************************************************************************ PP

         STAT  99 eavskpirCisrsrntrsssltkk 122
                  e +s +irCisr+r+ r+s+ ++k
  Gh_D11G2978 320 EDFSPSIRCISRNRTPRTSTIVWK 343
                  ******************999886 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.60.120.2001.3E-56179IPR013320Concanavalin A-like lectin/glucanase domain
SuperFamilySSF498991.58E-69180IPR013320Concanavalin A-like lectin/glucanase domain
PfamPF133851.6E-69177No hitNo description
CDDcd103385.00E-54597708No hitNo description
Gene3DG3DSA:3.30.505.102.0E-6600689IPR000980SH2 domain
SuperFamilySSF555503.95E-8604670IPR000980SH2 domain
PROSITE profilePS5000110.137608708IPR000980SH2 domain
PfamPF169133.8E-1057141021No hitNo description
SuperFamilySSF1034819.68E-6748843No hitNo description
Sequence ? help Back to Top
Protein Sequence    Length: 1037 aa     Download sequence    Send to blast
MGENNQIIGE DDYILLKDFK VETEVDEEKG FILCFWVYIF NSNAFPSTIL KQVYAETNSS  60
PPLLVLDEKT LMIFPLTCLL NEALGPGNTD LPSEVPKVSA AIEHPQNNWI HVGYEVSSDF  120
VRLYINGEIA GELHLSSLSN DNSMPNGSRK RTLIGITGDS NLQGFIHDAK VLPSTLSIKE  180
QYVKDPPLRL SIDESSISDI EEDNGFWNIV GGKASCRRIF SLDVLLLNTF GQPVNKELEV  240
VASLLYAHNW LPVEKTNDEE PPLLASCDGI EFASCDRPCK LSKGRASFKL KISKLSSKCD  300
NRQFCIKFGV SKLEGYRFLE DFSPSIRCIS RNRTPRTSTI VWKKISAVHP VNGSQPFGLD  360
DSSCEPKHNT VHEAKLSPTS KRVRLGEAKI SAVDQHSEEC NSLASKQNQV ENGFGSRLEA  420
RPENFEEMNT SLSDSESTGA RDSALKSVSS RGHSVPDVTI FRYCLGGLTD RSLLLKEIAT  480
TVSDEEISGF GEQVSLYSGC SHHRHQIKMA KRLIDEGTVA WNLISQNNLQ VQWESAVFEI  540
EEQFMKIASC SSRSLTQQDF ELLRKIAGCQ EYMAQENFEK MWCWLYPVAY TLSSDWVNEM  600
WNSTSPKWIE GFITKEEAEL SLQGSRGLQE PGTFILRFPT SRSWPHPDAG SLVVTYVGTD  660
YSLHHKLLSI DNVYSSGVRE KNVKVKPLQD MLLEEPELSR LGSTQHLIPP RRSICSRLLT  720
KFYFNNGGKS KWMASLMQTA GFPLLYLPLL FFPSFNKQSP SSSNNITHYV VYFSLGCLLA  780
IDNFMYTVGV KPLSISTYSL LCASQLVFNA VFSVVINCEK LGILTLNSII FITVSASMVA  840
IHPDSSETKR DEKNPVRKNE HTIGFISTVG ASAGYALLLS LTQFSFDKIL KKDRFSVVFE  900
MQIYTSLVSS FVCLLGLFLS LEFMDLKSEM EKFDEGKVIY VVSLIGIALA WQICTVGVVG  960
LIYLVSSLFS NVVSMLSLPF VPVVGVLLYE EKMDAIKVLA MLFTLWGFAS YIYQQYLDDK  1020
KSKKKESQEI EDSESEV
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in roots, leaves, stems and flowers. {ECO:0000269|PubMed:15073273}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016665268.10.0PREDICTED: uncharacterized protein LOC107885992 isoform X1
SwissprotQ56XZ10.0SHB_ARATH; SH2 domain-containing protein B
TrEMBLA0A1U8HMQ20.0A0A1U8HMQ2_GOSHI; uncharacterized protein LOC107885992 isoform X1
STRINGGorai.007G332400.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM52052645
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G78540.10.0SH2 domain protein B
Publications ? help Back to Top
  1. Yamada Y,Wang HY,Fukuzawa M,Barton GJ,Williams JG
    A new family of transcription factors.
    Development, 2008. 135(18): p. 3093-101
    [PMID:18701541]