PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Gh_D11G2978 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | STAT | ||||||||
Protein Properties | Length: 1037aa MW: 116155 Da PI: 5.5162 | ||||||||
Description | STAT family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | STAT | 178.4 | 1e-55 | 222 | 343 | 1 | 122 |
STAT 1 ldvvllnalgqpvekdvevvasLlyadsglvveksddaeapLLisydGvefssedrplkllrGrasfklkisqLsskcdnrLfrikfeipklkkypfl 98 ldv+lln++gqpv+k++evvasLlya + l+vek++d+e+pLL+s+dG+ef+s drp+kl +Grasfklkis+Lsskcdnr f+ikf + kl+ y+fl Gh_D11G2978 222 LDVLLLNTFGQPVNKELEVVASLLYAHNWLPVEKTNDEEPPLLASCDGIEFASCDRPCKLSKGRASFKLKISKLSSKCDNRQFCIKFGVSKLEGYRFL 319 89************************************************************************************************ PP STAT 99 eavskpirCisrsrntrsssltkk 122 e +s +irCisr+r+ r+s+ ++k Gh_D11G2978 320 EDFSPSIRCISRNRTPRTSTIVWK 343 ******************999886 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.60.120.200 | 1.3E-5 | 6 | 179 | IPR013320 | Concanavalin A-like lectin/glucanase domain |
SuperFamily | SSF49899 | 1.58E-6 | 9 | 180 | IPR013320 | Concanavalin A-like lectin/glucanase domain |
Pfam | PF13385 | 1.6E-6 | 9 | 177 | No hit | No description |
CDD | cd10338 | 5.00E-54 | 597 | 708 | No hit | No description |
Gene3D | G3DSA:3.30.505.10 | 2.0E-6 | 600 | 689 | IPR000980 | SH2 domain |
SuperFamily | SSF55550 | 3.95E-8 | 604 | 670 | IPR000980 | SH2 domain |
PROSITE profile | PS50001 | 10.137 | 608 | 708 | IPR000980 | SH2 domain |
Pfam | PF16913 | 3.8E-105 | 714 | 1021 | No hit | No description |
SuperFamily | SSF103481 | 9.68E-6 | 748 | 843 | No hit | No description |
Sequence ? help Back to Top |
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Protein Sequence Length: 1037 aa Download sequence Send to blast |
MGENNQIIGE DDYILLKDFK VETEVDEEKG FILCFWVYIF NSNAFPSTIL KQVYAETNSS 60 PPLLVLDEKT LMIFPLTCLL NEALGPGNTD LPSEVPKVSA AIEHPQNNWI HVGYEVSSDF 120 VRLYINGEIA GELHLSSLSN DNSMPNGSRK RTLIGITGDS NLQGFIHDAK VLPSTLSIKE 180 QYVKDPPLRL SIDESSISDI EEDNGFWNIV GGKASCRRIF SLDVLLLNTF GQPVNKELEV 240 VASLLYAHNW LPVEKTNDEE PPLLASCDGI EFASCDRPCK LSKGRASFKL KISKLSSKCD 300 NRQFCIKFGV SKLEGYRFLE DFSPSIRCIS RNRTPRTSTI VWKKISAVHP VNGSQPFGLD 360 DSSCEPKHNT VHEAKLSPTS KRVRLGEAKI SAVDQHSEEC NSLASKQNQV ENGFGSRLEA 420 RPENFEEMNT SLSDSESTGA RDSALKSVSS RGHSVPDVTI FRYCLGGLTD RSLLLKEIAT 480 TVSDEEISGF GEQVSLYSGC SHHRHQIKMA KRLIDEGTVA WNLISQNNLQ VQWESAVFEI 540 EEQFMKIASC SSRSLTQQDF ELLRKIAGCQ EYMAQENFEK MWCWLYPVAY TLSSDWVNEM 600 WNSTSPKWIE GFITKEEAEL SLQGSRGLQE PGTFILRFPT SRSWPHPDAG SLVVTYVGTD 660 YSLHHKLLSI DNVYSSGVRE KNVKVKPLQD MLLEEPELSR LGSTQHLIPP RRSICSRLLT 720 KFYFNNGGKS KWMASLMQTA GFPLLYLPLL FFPSFNKQSP SSSNNITHYV VYFSLGCLLA 780 IDNFMYTVGV KPLSISTYSL LCASQLVFNA VFSVVINCEK LGILTLNSII FITVSASMVA 840 IHPDSSETKR DEKNPVRKNE HTIGFISTVG ASAGYALLLS LTQFSFDKIL KKDRFSVVFE 900 MQIYTSLVSS FVCLLGLFLS LEFMDLKSEM EKFDEGKVIY VVSLIGIALA WQICTVGVVG 960 LIYLVSSLFS NVVSMLSLPF VPVVGVLLYE EKMDAIKVLA MLFTLWGFAS YIYQQYLDDK 1020 KSKKKESQEI EDSESEV |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in roots, leaves, stems and flowers. {ECO:0000269|PubMed:15073273}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016665268.1 | 0.0 | PREDICTED: uncharacterized protein LOC107885992 isoform X1 | ||||
Swissprot | Q56XZ1 | 0.0 | SHB_ARATH; SH2 domain-containing protein B | ||||
TrEMBL | A0A1U8HMQ2 | 0.0 | A0A1U8HMQ2_GOSHI; uncharacterized protein LOC107885992 isoform X1 | ||||
STRING | Gorai.007G332400.1 | 0.0 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM5205 | 26 | 45 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G78540.1 | 0.0 | SH2 domain protein B |
Publications ? help Back to Top | |||
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